CVS commit: pkgsrc/math/py-arviz

To: pkgsrc-changes%NetBSD.org@localhost
Subject: CVS commit: pkgsrc/math/py-arviz
From: "Min Sik Kim" <minskim%netbsd.org@localhost>
Date: Sun, 16 Feb 2020 03:02:15 +0000

Module Name:    pkgsrc
Committed By:   minskim
Date:           Sun Feb 16 03:02:15 UTC 2020

Modified Files:
        pkgsrc/math/py-arviz: Makefile PLIST distinfo

Log Message:
math/py-arviz: Update to 0.6.1

Highlights:

- Initial bokeh support.
- Fully support numpyro
- log_likelihood and observed data from pyro
- ArviZ.jl
- improve rcparams
- fix az.concat functionality
- distplot docstring plotting example


To generate a diff of this commit:
cvs rdiff -u -r1.2 -r1.3 pkgsrc/math/py-arviz/Makefile
cvs rdiff -u -r1.1 -r1.2 pkgsrc/math/py-arviz/PLIST \
    pkgsrc/math/py-arviz/distinfo

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/math/py-arviz/Makefile
diff -u pkgsrc/math/py-arviz/Makefile:1.2 pkgsrc/math/py-arviz/Makefile:1.3
--- pkgsrc/math/py-arviz/Makefile:1.2   Sat Jan 18 23:32:52 2020
+++ pkgsrc/math/py-arviz/Makefile       Sun Feb 16 03:02:15 2020
@@ -1,23 +1,24 @@
-# $NetBSD: Makefile,v 1.2 2020/01/18 23:32:52 rillig Exp $
+# $NetBSD: Makefile,v 1.3 2020/02/16 03:02:15 minskim Exp $
 
-DISTNAME=      arviz-0.5.1
+DISTNAME=      arviz-0.6.1
 PKGNAME=       ${PYPKGPREFIX}-${DISTNAME}
 CATEGORIES=    math
 MASTER_SITES=  ${MASTER_SITE_PYPI:=a/arviz/}
 
 MAINTAINER=    minskim%NetBSD.org@localhost
-HOMEPAGE=      https://github.com/arviz-devs/arviz
+HOMEPAGE=      https://arviz-devs.github.io/arviz/
 COMMENT=       Exploratory analysis of Bayesian models
 LICENSE=       apache-2.0
 
 DEPENDS+=      ${PYPKGPREFIX}-matplotlib>=3.0:../../graphics/py-matplotlib
 DEPENDS+=      ${PYPKGPREFIX}-netCDF4-[0-9]*:../../math/py-netCDF4
 DEPENDS+=      ${PYPKGPREFIX}-numpy>=1.12:../../math/py-numpy
+DEPENDS+=      ${PYPKGPREFIX}-packaging-[0-9]*:../../devel/py-packaging
 DEPENDS+=      ${PYPKGPREFIX}-pandas>=0.23:../../math/py-pandas
 DEPENDS+=      ${PYPKGPREFIX}-scipy>=0.19:../../math/py-scipy
 DEPENDS+=      ${PYPKGPREFIX}-xarray>=0.11:../../math/py-xarray
 
-PYTHON_VERSIONS_INCOMPATIBLE=  27      # py-pandas
+PYTHON_VERSIONS_INCOMPATIBLE=  27
 
 USE_LANGUAGES= # none
 

Index: pkgsrc/math/py-arviz/PLIST
diff -u pkgsrc/math/py-arviz/PLIST:1.1 pkgsrc/math/py-arviz/PLIST:1.2
--- pkgsrc/math/py-arviz/PLIST:1.1      Mon Nov 25 04:08:33 2019
+++ pkgsrc/math/py-arviz/PLIST  Sun Feb 16 03:02:15 2020
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.1 2019/11/25 04:08:33 minskim Exp $
+@comment $NetBSD: PLIST,v 1.2 2020/02/16 03:02:15 minskim Exp $
 ${PYSITELIB}/${EGG_INFODIR}/PKG-INFO
 ${PYSITELIB}/${EGG_INFODIR}/SOURCES.txt
 ${PYSITELIB}/${EGG_INFODIR}/dependency_links.txt
@@ -60,6 +60,141 @@ ${PYSITELIB}/arviz/plots/__init__.pyo
 ${PYSITELIB}/arviz/plots/autocorrplot.py
 ${PYSITELIB}/arviz/plots/autocorrplot.pyc
 ${PYSITELIB}/arviz/plots/autocorrplot.pyo
+${PYSITELIB}/arviz/plots/backends/__init__.py
+${PYSITELIB}/arviz/plots/backends/__init__.pyc
+${PYSITELIB}/arviz/plots/backends/__init__.pyo
+${PYSITELIB}/arviz/plots/backends/bokeh/__init__.py
+${PYSITELIB}/arviz/plots/backends/bokeh/__init__.pyc
+${PYSITELIB}/arviz/plots/backends/bokeh/__init__.pyo
+${PYSITELIB}/arviz/plots/backends/bokeh/autocorrplot.py
+${PYSITELIB}/arviz/plots/backends/bokeh/autocorrplot.pyc
+${PYSITELIB}/arviz/plots/backends/bokeh/autocorrplot.pyo
+${PYSITELIB}/arviz/plots/backends/bokeh/compareplot.py
+${PYSITELIB}/arviz/plots/backends/bokeh/compareplot.pyc
+${PYSITELIB}/arviz/plots/backends/bokeh/compareplot.pyo
+${PYSITELIB}/arviz/plots/backends/bokeh/densityplot.py
+${PYSITELIB}/arviz/plots/backends/bokeh/densityplot.pyc
+${PYSITELIB}/arviz/plots/backends/bokeh/densityplot.pyo
+${PYSITELIB}/arviz/plots/backends/bokeh/distplot.py
+${PYSITELIB}/arviz/plots/backends/bokeh/distplot.pyc
+${PYSITELIB}/arviz/plots/backends/bokeh/distplot.pyo
+${PYSITELIB}/arviz/plots/backends/bokeh/elpdplot.py
+${PYSITELIB}/arviz/plots/backends/bokeh/elpdplot.pyc
+${PYSITELIB}/arviz/plots/backends/bokeh/elpdplot.pyo
+${PYSITELIB}/arviz/plots/backends/bokeh/energyplot.py
+${PYSITELIB}/arviz/plots/backends/bokeh/energyplot.pyc
+${PYSITELIB}/arviz/plots/backends/bokeh/energyplot.pyo
+${PYSITELIB}/arviz/plots/backends/bokeh/essplot.py
+${PYSITELIB}/arviz/plots/backends/bokeh/essplot.pyc
+${PYSITELIB}/arviz/plots/backends/bokeh/essplot.pyo
+${PYSITELIB}/arviz/plots/backends/bokeh/forestplot.py
+${PYSITELIB}/arviz/plots/backends/bokeh/forestplot.pyc
+${PYSITELIB}/arviz/plots/backends/bokeh/forestplot.pyo
+${PYSITELIB}/arviz/plots/backends/bokeh/hpdplot.py
+${PYSITELIB}/arviz/plots/backends/bokeh/hpdplot.pyc
+${PYSITELIB}/arviz/plots/backends/bokeh/hpdplot.pyo
+${PYSITELIB}/arviz/plots/backends/bokeh/jointplot.py
+${PYSITELIB}/arviz/plots/backends/bokeh/jointplot.pyc
+${PYSITELIB}/arviz/plots/backends/bokeh/jointplot.pyo
+${PYSITELIB}/arviz/plots/backends/bokeh/kdeplot.py
+${PYSITELIB}/arviz/plots/backends/bokeh/kdeplot.pyc
+${PYSITELIB}/arviz/plots/backends/bokeh/kdeplot.pyo
+${PYSITELIB}/arviz/plots/backends/bokeh/khatplot.py
+${PYSITELIB}/arviz/plots/backends/bokeh/khatplot.pyc
+${PYSITELIB}/arviz/plots/backends/bokeh/khatplot.pyo
+${PYSITELIB}/arviz/plots/backends/bokeh/loopitplot.py
+${PYSITELIB}/arviz/plots/backends/bokeh/loopitplot.pyc
+${PYSITELIB}/arviz/plots/backends/bokeh/loopitplot.pyo
+${PYSITELIB}/arviz/plots/backends/bokeh/mcseplot.py
+${PYSITELIB}/arviz/plots/backends/bokeh/mcseplot.pyc
+${PYSITELIB}/arviz/plots/backends/bokeh/mcseplot.pyo
+${PYSITELIB}/arviz/plots/backends/bokeh/pairplot.py
+${PYSITELIB}/arviz/plots/backends/bokeh/pairplot.pyc
+${PYSITELIB}/arviz/plots/backends/bokeh/pairplot.pyo
+${PYSITELIB}/arviz/plots/backends/bokeh/parallelplot.py
+${PYSITELIB}/arviz/plots/backends/bokeh/parallelplot.pyc
+${PYSITELIB}/arviz/plots/backends/bokeh/parallelplot.pyo
+${PYSITELIB}/arviz/plots/backends/bokeh/posteriorplot.py
+${PYSITELIB}/arviz/plots/backends/bokeh/posteriorplot.pyc
+${PYSITELIB}/arviz/plots/backends/bokeh/posteriorplot.pyo
+${PYSITELIB}/arviz/plots/backends/bokeh/ppcplot.py
+${PYSITELIB}/arviz/plots/backends/bokeh/ppcplot.pyc
+${PYSITELIB}/arviz/plots/backends/bokeh/ppcplot.pyo
+${PYSITELIB}/arviz/plots/backends/bokeh/rankplot.py
+${PYSITELIB}/arviz/plots/backends/bokeh/rankplot.pyc
+${PYSITELIB}/arviz/plots/backends/bokeh/rankplot.pyo
+${PYSITELIB}/arviz/plots/backends/bokeh/traceplot.py
+${PYSITELIB}/arviz/plots/backends/bokeh/traceplot.pyc
+${PYSITELIB}/arviz/plots/backends/bokeh/traceplot.pyo
+${PYSITELIB}/arviz/plots/backends/bokeh/violinplot.py
+${PYSITELIB}/arviz/plots/backends/bokeh/violinplot.pyc
+${PYSITELIB}/arviz/plots/backends/bokeh/violinplot.pyo
+${PYSITELIB}/arviz/plots/backends/matplotlib/__init__.py
+${PYSITELIB}/arviz/plots/backends/matplotlib/__init__.pyc
+${PYSITELIB}/arviz/plots/backends/matplotlib/__init__.pyo
+${PYSITELIB}/arviz/plots/backends/matplotlib/autocorrplot.py
+${PYSITELIB}/arviz/plots/backends/matplotlib/autocorrplot.pyc
+${PYSITELIB}/arviz/plots/backends/matplotlib/autocorrplot.pyo
+${PYSITELIB}/arviz/plots/backends/matplotlib/compareplot.py
+${PYSITELIB}/arviz/plots/backends/matplotlib/compareplot.pyc
+${PYSITELIB}/arviz/plots/backends/matplotlib/compareplot.pyo
+${PYSITELIB}/arviz/plots/backends/matplotlib/densityplot.py
+${PYSITELIB}/arviz/plots/backends/matplotlib/densityplot.pyc
+${PYSITELIB}/arviz/plots/backends/matplotlib/densityplot.pyo
+${PYSITELIB}/arviz/plots/backends/matplotlib/distplot.py
+${PYSITELIB}/arviz/plots/backends/matplotlib/distplot.pyc
+${PYSITELIB}/arviz/plots/backends/matplotlib/distplot.pyo
+${PYSITELIB}/arviz/plots/backends/matplotlib/elpdplot.py
+${PYSITELIB}/arviz/plots/backends/matplotlib/elpdplot.pyc
+${PYSITELIB}/arviz/plots/backends/matplotlib/elpdplot.pyo
+${PYSITELIB}/arviz/plots/backends/matplotlib/energyplot.py
+${PYSITELIB}/arviz/plots/backends/matplotlib/energyplot.pyc
+${PYSITELIB}/arviz/plots/backends/matplotlib/energyplot.pyo
+${PYSITELIB}/arviz/plots/backends/matplotlib/essplot.py
+${PYSITELIB}/arviz/plots/backends/matplotlib/essplot.pyc
+${PYSITELIB}/arviz/plots/backends/matplotlib/essplot.pyo
+${PYSITELIB}/arviz/plots/backends/matplotlib/forestplot.py
+${PYSITELIB}/arviz/plots/backends/matplotlib/forestplot.pyc
+${PYSITELIB}/arviz/plots/backends/matplotlib/forestplot.pyo
+${PYSITELIB}/arviz/plots/backends/matplotlib/hpdplot.py
+${PYSITELIB}/arviz/plots/backends/matplotlib/hpdplot.pyc
+${PYSITELIB}/arviz/plots/backends/matplotlib/hpdplot.pyo
+${PYSITELIB}/arviz/plots/backends/matplotlib/jointplot.py
+${PYSITELIB}/arviz/plots/backends/matplotlib/jointplot.pyc
+${PYSITELIB}/arviz/plots/backends/matplotlib/jointplot.pyo
+${PYSITELIB}/arviz/plots/backends/matplotlib/kdeplot.py
+${PYSITELIB}/arviz/plots/backends/matplotlib/kdeplot.pyc
+${PYSITELIB}/arviz/plots/backends/matplotlib/kdeplot.pyo
+${PYSITELIB}/arviz/plots/backends/matplotlib/khatplot.py
+${PYSITELIB}/arviz/plots/backends/matplotlib/khatplot.pyc
+${PYSITELIB}/arviz/plots/backends/matplotlib/khatplot.pyo
+${PYSITELIB}/arviz/plots/backends/matplotlib/loopitplot.py
+${PYSITELIB}/arviz/plots/backends/matplotlib/loopitplot.pyc
+${PYSITELIB}/arviz/plots/backends/matplotlib/loopitplot.pyo
+${PYSITELIB}/arviz/plots/backends/matplotlib/mcseplot.py
+${PYSITELIB}/arviz/plots/backends/matplotlib/mcseplot.pyc
+${PYSITELIB}/arviz/plots/backends/matplotlib/mcseplot.pyo
+${PYSITELIB}/arviz/plots/backends/matplotlib/pairplot.py
+${PYSITELIB}/arviz/plots/backends/matplotlib/pairplot.pyc
+${PYSITELIB}/arviz/plots/backends/matplotlib/pairplot.pyo
+${PYSITELIB}/arviz/plots/backends/matplotlib/parallelplot.py
+${PYSITELIB}/arviz/plots/backends/matplotlib/parallelplot.pyc
+${PYSITELIB}/arviz/plots/backends/matplotlib/parallelplot.pyo
+${PYSITELIB}/arviz/plots/backends/matplotlib/posteriorplot.py
+${PYSITELIB}/arviz/plots/backends/matplotlib/posteriorplot.pyc
+${PYSITELIB}/arviz/plots/backends/matplotlib/posteriorplot.pyo
+${PYSITELIB}/arviz/plots/backends/matplotlib/ppcplot.py
+${PYSITELIB}/arviz/plots/backends/matplotlib/ppcplot.pyc
+${PYSITELIB}/arviz/plots/backends/matplotlib/ppcplot.pyo
+${PYSITELIB}/arviz/plots/backends/matplotlib/rankplot.py
+${PYSITELIB}/arviz/plots/backends/matplotlib/rankplot.pyc
+${PYSITELIB}/arviz/plots/backends/matplotlib/rankplot.pyo
+${PYSITELIB}/arviz/plots/backends/matplotlib/traceplot.py
+${PYSITELIB}/arviz/plots/backends/matplotlib/traceplot.pyc
+${PYSITELIB}/arviz/plots/backends/matplotlib/traceplot.pyo
+${PYSITELIB}/arviz/plots/backends/matplotlib/violinplot.py
+${PYSITELIB}/arviz/plots/backends/matplotlib/violinplot.pyc
+${PYSITELIB}/arviz/plots/backends/matplotlib/violinplot.pyo
 ${PYSITELIB}/arviz/plots/compareplot.py
 ${PYSITELIB}/arviz/plots/compareplot.pyc
 ${PYSITELIB}/arviz/plots/compareplot.pyo
@@ -184,9 +319,12 @@ ${PYSITELIB}/arviz/tests/test_diagnostic
 ${PYSITELIB}/arviz/tests/test_plot_utils.py
 ${PYSITELIB}/arviz/tests/test_plot_utils.pyc
 ${PYSITELIB}/arviz/tests/test_plot_utils.pyo
-${PYSITELIB}/arviz/tests/test_plots.py
-${PYSITELIB}/arviz/tests/test_plots.pyc
-${PYSITELIB}/arviz/tests/test_plots.pyo
+${PYSITELIB}/arviz/tests/test_plots_bokeh.py
+${PYSITELIB}/arviz/tests/test_plots_bokeh.pyc
+${PYSITELIB}/arviz/tests/test_plots_bokeh.pyo
+${PYSITELIB}/arviz/tests/test_plots_matplotlib.py
+${PYSITELIB}/arviz/tests/test_plots_matplotlib.pyc
+${PYSITELIB}/arviz/tests/test_plots_matplotlib.pyo
 ${PYSITELIB}/arviz/tests/test_rcparams.py
 ${PYSITELIB}/arviz/tests/test_rcparams.pyc
 ${PYSITELIB}/arviz/tests/test_rcparams.pyo
Index: pkgsrc/math/py-arviz/distinfo
diff -u pkgsrc/math/py-arviz/distinfo:1.1 pkgsrc/math/py-arviz/distinfo:1.2
--- pkgsrc/math/py-arviz/distinfo:1.1   Mon Nov 25 04:08:33 2019
+++ pkgsrc/math/py-arviz/distinfo       Sun Feb 16 03:02:15 2020
@@ -1,6 +1,6 @@
-$NetBSD: distinfo,v 1.1 2019/11/25 04:08:33 minskim Exp $
+$NetBSD: distinfo,v 1.2 2020/02/16 03:02:15 minskim Exp $
 
-SHA1 (arviz-0.5.1.tar.gz) = dbf43b87e99854f9f8fe0f49bc9a474510153cb4
-RMD160 (arviz-0.5.1.tar.gz) = 47fe8fb776c1b943a81c559f7b60caef9f52680b
-SHA512 (arviz-0.5.1.tar.gz) = 79179870fc4529af495ff9f567222be3116bdeb85d71e5042a655374a4c07079af864d9b09e2b5f361356d825dbec956146d5201ff57d0df8b2d3c29dda42f33
-Size (arviz-0.5.1.tar.gz) = 1321172 bytes
+SHA1 (arviz-0.6.1.tar.gz) = b97d3e8552b652ca0687c000c8fe695730149870
+RMD160 (arviz-0.6.1.tar.gz) = fae4cc2ba4b07766cb93d648a4d07a6c83540e61
+SHA512 (arviz-0.6.1.tar.gz) = af13aea66ec2fe7ee62168d9ec7d72e221b658bbdfe44e13f7c8ddaab5d48792fe059d15be1806d61eaf4d223659a6e4adec1786396db60fa26dec7fedcbf436
+Size (arviz-0.6.1.tar.gz) = 1363493 bytes

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