CVS commit: pkgsrc/geography

["Brook Milligan" <brook%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   brook
Date:           Fri Aug  7 03:55:17 UTC 2020

Modified Files:
        pkgsrc/geography: Makefile
Added Files:
        pkgsrc/geography/R-spatstat: DESCR Makefile distinfo

Log Message:
geography/R-spatstat: import R-spatstat-1.63.2

Comprehensive open-source toolbox for analysing Spatial Point
Patterns. Focused mainly on two-dimensional point patterns, including
multitype/marked points, in any spatial region. Also supports
three-dimensional point patterns, space-time point patterns in any
number of dimensions, point patterns on a linear network, and patterns
of other geometrical objects. Supports spatial covariate data such as
pixel images. Contains over 2000 functions for plotting spatial data,
exploratory data analysis, model-fitting, simulation, spatial
sampling, model diagnostics, and formal inference. Many data types and
exploratory methods are supported.  Formal hypothesis tests of random
pattern and tests for covariate effects are also supported. Parametric
models can be fitted to point pattern data using the functions ppm(),
kppm(), slrm(), dppm() similar to glm(). Types of models include
Poisson, Gibbs and Cox point processes, Neyman-Scott cluster
processes, and determinantal point processes. Models may involve
dependence on covariates, inter-point interaction, cluster formation
and dependence on marks. Models are fitted by maximum likelihood,
logistic regression, minimum contrast, and composite likelihood
methods. A model can be fitted to a list of point patterns (replicated
point pattern data) using the function mppm(). The model can include
random effects and fixed effects depending on the experimental design,
in addition to all the features listed above.  Fitted point process
models can be simulated, automatically. Formal hypothesis tests of a
fitted model are supported along with basic tools for model selection.


To generate a diff of this commit:
cvs rdiff -u -r1.88 -r1.89 pkgsrc/geography/Makefile
cvs rdiff -u -r0 -r1.1 pkgsrc/geography/R-spatstat/DESCR \
    pkgsrc/geography/R-spatstat/Makefile pkgsrc/geography/R-spatstat/distinfo

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/geography/Makefile
diff -u pkgsrc/geography/Makefile:1.88 pkgsrc/geography/Makefile:1.89
--- pkgsrc/geography/Makefile:1.88      Fri Aug  7 03:44:39 2020
+++ pkgsrc/geography/Makefile   Fri Aug  7 03:55:17 2020
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.88 2020/08/07 03:44:39 brook Exp $
+# $NetBSD: Makefile,v 1.89 2020/08/07 03:55:17 brook Exp $
 #
 
 COMMENT=       Software for geographical-related uses
@@ -11,6 +11,7 @@ SUBDIR+=      R-maps
 SUBDIR+=       R-maptools
 SUBDIR+=       R-prettymapr
 SUBDIR+=       R-rgeos
+SUBDIR+=       R-spatstat
 SUBDIR+=       R-spatstat.data
 SUBDIR+=       R-spatstat.utils
 SUBDIR+=       cm2gpx

Added files:

Index: pkgsrc/geography/R-spatstat/DESCR
diff -u /dev/null pkgsrc/geography/R-spatstat/DESCR:1.1
--- /dev/null   Fri Aug  7 03:55:17 2020
+++ pkgsrc/geography/R-spatstat/DESCR   Fri Aug  7 03:55:17 2020
@@ -0,0 +1,24 @@
+Comprehensive open-source toolbox for analysing Spatial Point
+Patterns. Focused mainly on two-dimensional point patterns, including
+multitype/marked points, in any spatial region. Also supports
+three-dimensional point patterns, space-time point patterns in any
+number of dimensions, point patterns on a linear network, and patterns
+of other geometrical objects. Supports spatial covariate data such as
+pixel images. Contains over 2000 functions for plotting spatial data,
+exploratory data analysis, model-fitting, simulation, spatial
+sampling, model diagnostics, and formal inference. Many data types and
+exploratory methods are supported.  Formal hypothesis tests of random
+pattern and tests for covariate effects are also supported. Parametric
+models can be fitted to point pattern data using the functions ppm(),
+kppm(), slrm(), dppm() similar to glm(). Types of models include
+Poisson, Gibbs and Cox point processes, Neyman-Scott cluster
+processes, and determinantal point processes. Models may involve
+dependence on covariates, inter-point interaction, cluster formation
+and dependence on marks. Models are fitted by maximum likelihood,
+logistic regression, minimum contrast, and composite likelihood
+methods. A model can be fitted to a list of point patterns (replicated
+point pattern data) using the function mppm(). The model can include
+random effects and fixed effects depending on the experimental design,
+in addition to all the features listed above.  Fitted point process
+models can be simulated, automatically. Formal hypothesis tests of a
+fitted model are supported along with basic tools for model selection.
Index: pkgsrc/geography/R-spatstat/Makefile
diff -u /dev/null pkgsrc/geography/R-spatstat/Makefile:1.1
--- /dev/null   Fri Aug  7 03:55:17 2020
+++ pkgsrc/geography/R-spatstat/Makefile        Fri Aug  7 03:55:17 2020
@@ -0,0 +1,22 @@
+# $NetBSD: Makefile,v 1.1 2020/08/07 03:55:17 brook Exp $
+
+R_PKGNAME=     spatstat
+R_PKGVER=      1.63-2
+CATEGORIES=    geography
+
+MAINTAINER=    pkgsrc-users%NetBSD.org@localhost
+COMMENT=       Spatial Point Pattern Analysis, Model-Fitting, Simulation, Tests
+LICENSE=       gnu-gpl-v2
+
+USE_LANGUAGES+=        c c++
+
+DEPENDS+=      R-deldir>=0.0.21:../../geography/R-deldir
+DEPENDS+=      R-spatstat.data>=1.4.3:../../geography/R-spatstat.data
+DEPENDS+=      R-spatstat.utils>=1.17.0:../../geography/R-spatstat.utils
+DEPENDS+=      R-abind>=1.4.0:../../math/R-abind
+DEPENDS+=      R-goftest>=1.0.3:../../math/R-goftest
+DEPENDS+=      R-polyclip>=1.5.0:../../graphics/R-polyclip
+DEPENDS+=      R-tensor>=1.5:../../math/R-tensor
+
+.include "../../math/R/Makefile.extension"
+.include "../../mk/bsd.pkg.mk"
Index: pkgsrc/geography/R-spatstat/distinfo
diff -u /dev/null pkgsrc/geography/R-spatstat/distinfo:1.1
--- /dev/null   Fri Aug  7 03:55:17 2020
+++ pkgsrc/geography/R-spatstat/distinfo        Fri Aug  7 03:55:17 2020
@@ -0,0 +1,6 @@
+$NetBSD: distinfo,v 1.1 2020/08/07 03:55:17 brook Exp $
+
+SHA1 (R/spatstat_1.63-2.tar.gz) = ad5767ca719e529f3cb37b34bd1cb12c8371ac30
+RMD160 (R/spatstat_1.63-2.tar.gz) = 212c6d53bae938b7f4bce1bc49d936b2fc982f80
+SHA512 (R/spatstat_1.63-2.tar.gz) = 5fe1bf55979a193b8b23e5ddee623638e009e78c2074e9306f4b39b206ccb3a8be00771fb941d47af7843d967fef515fd707b58462825ec6ac2174f43193f1c2
+Size (R/spatstat_1.63-2.tar.gz) = 6715623 bytes