CVS commit: pkgsrc/math/R-car

["Makoto Fujiwara" <mef%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   mef
Date:           Sun Sep 20 23:46:00 UTC 2020

Modified Files:
        pkgsrc/math/R-car: Makefile distinfo

Log Message:
(math/R-car) Updated 3.0.3 to 3.0.9. make test fails

Changes to Version 3.0-9

  o Declare linearHypothesis.survreg() method, previously omitted from
    NAMESPACE (following question by Robert Dinterman); tweaks to survreg
    methods for linearHypothesis(), Anova(), and deltaMethod() to make them
    more robust.

  o Fix bug in hccm() when model matrix includes just one column (reported by
    Justin Yap).

  o Fix buglet in scatterplotMatrix.formula() when groups specified.

  o Several functions are now generic: avPlots(), ceresPlots(), crPlots(),
    mcPlots().

  o Enable spread smoothers for crPlot(), ceresPlot(), and residualPlot()
    (suggestion of Dave Armstrong).

  o Small changes to docs.

Changes to Version 3.0-8

  o Import() now defaults to stringsAsFactors=FALSE to match the default
    behavior of read.table() as of R 4.0.0.

  o New strings2factors() function to convert character variables in a data
    frame to factors.

  o Added data.frame method for S().

  o Fixed a bug in estimateTransform.lm() that returned the correct answer
    with an unneeded warning.

  o Fixed Anova.coxph() to handle weights properly (problem reported by
    Daniel Morillo Cuadrado).

Changes to Version 3.0-7

  o Fixed boxCox(), powerTransform() to work when 'car' package is not attached

  o Fixed Anova() to work with "lme" models without an intercept (to fix bug
    reported by Benjamin Tyner).

Changes to Version 3.0-6

  o Explicitly import utils::globalVariables() (suggestion of Vince Carey).

Changes to Version 3.0-5

  o Change class(x) == "y" to inherits(x, "y") throughout code (thanks to Martin Maechler).

Changes to Version 3.0-4

  o Scoping improvements to deltaMethod(), which now also takes an optional
    hypothesized value; contribution and suggestion by Pavel Krivitsky.

  o Make Anova() work for coxph() models with strata (following problem
    reported by Susan Galloway Hilsenbeck).

  o Modify carPalette() to provide a colorblind-friendly palette as an option
    (suggestion of Sercan Kahveci).

  o Small improvements.


To generate a diff of this commit:
cvs rdiff -u -r1.7 -r1.8 pkgsrc/math/R-car/Makefile
cvs rdiff -u -r1.6 -r1.7 pkgsrc/math/R-car/distinfo

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/math/R-car/Makefile
diff -u pkgsrc/math/R-car/Makefile:1.7 pkgsrc/math/R-car/Makefile:1.8
--- pkgsrc/math/R-car/Makefile:1.7      Thu Aug  8 19:53:47 2019
+++ pkgsrc/math/R-car/Makefile  Sun Sep 20 23:46:00 2020
@@ -1,8 +1,7 @@
-# $NetBSD: Makefile,v 1.7 2019/08/08 19:53:47 brook Exp $
+# $NetBSD: Makefile,v 1.8 2020/09/20 23:46:00 mef Exp $
 
 R_PKGNAME=     car
-R_PKGVER=      3.0-3
-CATEGORIES=    math
+R_PKGVER=      3.0-9
 
 MAINTAINER=    pkgsrc-users%NetBSD.org@localhost
 COMMENT=       Companion to 'Applied Regression'
@@ -16,6 +15,10 @@ DEPENDS+=    R-lme4>=1.1.21:../../math/R-lm
 DEPENDS+=      R-pbkrtest>=0.4.4:../../math/R-pbkrtest
 DEPENDS+=      R-quantreg>=5.42.1:../../math/R-quantreg
 
+# Packages suggested but not available:
+#   'alr4', 'coxme', 'leaps', 'lmtest', 'rgl'
+TEST_DEPENDS+= R-lmtest-[0-9]*:../../math/R-lmtest
+
 USE_LANGUAGES= # none
 
 .include "../../math/R/Makefile.extension"

Index: pkgsrc/math/R-car/distinfo
diff -u pkgsrc/math/R-car/distinfo:1.6 pkgsrc/math/R-car/distinfo:1.7
--- pkgsrc/math/R-car/distinfo:1.6      Wed Jul 31 19:03:32 2019
+++ pkgsrc/math/R-car/distinfo  Sun Sep 20 23:46:00 2020
@@ -1,6 +1,6 @@
-$NetBSD: distinfo,v 1.6 2019/07/31 19:03:32 brook Exp $
+$NetBSD: distinfo,v 1.7 2020/09/20 23:46:00 mef Exp $
 
-SHA1 (R/car_3.0-3.tar.gz) = a89382a156a24b5c5cd067ab4ef0c429ff181b64
-RMD160 (R/car_3.0-3.tar.gz) = 9734677a6b396deb8600d54470454677b9e3428d
-SHA512 (R/car_3.0-3.tar.gz) = 5adc26e05c2c8210a5d52718585f30a7eda04f207d3f5d3abf2c48175a7b98a1f88e4b1e24748f08dccef6b16fa2145620613f5cc158d9a59877196c87b8880a
-Size (R/car_3.0-3.tar.gz) = 539020 bytes
+SHA1 (R/car_3.0-9.tar.gz) = a70f2e91d14a42a7a9767247756788b88d9fb7cc
+RMD160 (R/car_3.0-9.tar.gz) = 5c69cdc2d53066ba2dd5624a93a138e84887565d
+SHA512 (R/car_3.0-9.tar.gz) = 6a0ece87fd84fdd0ccf6a13c10cc9f435c7423774602ca14c5e27889108e9c28110e9fd449017d7c014ce2dd7530a89fed7c5672c65618de72aef5c204c348d7
+Size (R/car_3.0-9.tar.gz) = 500448 bytes