CVS commit: pkgsrc/biology

["Benny Siegert" <bsiegert%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   bsiegert
Date:           Tue Nov  3 16:41:26 UTC 2020

Modified Files:
        pkgsrc/biology: Makefile
Added Files:
        pkgsrc/biology/maeparser: DESCR Makefile PLIST buildlink3.mk distinfo

Log Message:
New package, maeparser-1.4.2.

maeparser is a parser for Schrodinger Maestro files.

Structure files (.mae,.maegz,.mae.gz) can contain multiple structures
delimited by "f_m_ct".  See MaeConstants.hpp for standard block and property
names.


To generate a diff of this commit:
cvs rdiff -u -r1.56 -r1.57 pkgsrc/biology/Makefile
cvs rdiff -u -r0 -r1.1 pkgsrc/biology/maeparser/DESCR \
    pkgsrc/biology/maeparser/Makefile pkgsrc/biology/maeparser/PLIST \
    pkgsrc/biology/maeparser/buildlink3.mk pkgsrc/biology/maeparser/distinfo

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/biology/Makefile
diff -u pkgsrc/biology/Makefile:1.56 pkgsrc/biology/Makefile:1.57
--- pkgsrc/biology/Makefile:1.56        Mon Aug 10 18:18:46 2020
+++ pkgsrc/biology/Makefile     Tue Nov  3 16:41:26 2020
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.56 2020/08/10 18:18:46 brook Exp $
+# $NetBSD: Makefile,v 1.57 2020/11/03 16:41:26 bsiegert Exp $
 #
 
 COMMENT=       Software for the biological sciences
@@ -30,6 +30,7 @@ SUBDIR+=      hmmer
 SUBDIR+=       htslib
 SUBDIR+=       kallisto
 SUBDIR+=       lucy
+SUBDIR+=       maeparser
 SUBDIR+=       mopac
 SUBDIR+=       mpqc
 SUBDIR+=       mummer

Added files:

Index: pkgsrc/biology/maeparser/DESCR
diff -u /dev/null pkgsrc/biology/maeparser/DESCR:1.1
--- /dev/null   Tue Nov  3 16:41:26 2020
+++ pkgsrc/biology/maeparser/DESCR      Tue Nov  3 16:41:26 2020
@@ -0,0 +1,5 @@
+maeparser is a parser for Schrodinger Maestro files.
+
+Structure files (.mae,.maegz,.mae.gz) can contain multiple structures
+delimited by "f_m_ct".  See MaeConstants.hpp for standard block and property
+names.
Index: pkgsrc/biology/maeparser/Makefile
diff -u /dev/null pkgsrc/biology/maeparser/Makefile:1.1
--- /dev/null   Tue Nov  3 16:41:26 2020
+++ pkgsrc/biology/maeparser/Makefile   Tue Nov  3 16:41:26 2020
@@ -0,0 +1,19 @@
+# $NetBSD: Makefile,v 1.1 2020/11/03 16:41:26 bsiegert Exp $
+
+GITHUB_TAG=    v${PKGVERSION_NOREV}
+DISTNAME=      maeparser-1.2.4
+CATEGORIES=    biology
+MASTER_SITES=  ${MASTER_SITE_GITHUB:=schrodinger/}
+
+MAINTAINER=    bsiegert%NetBSD.org@localhost
+HOMEPAGE=      https://github.com/schrodinger/maeparser/
+COMMENT=       Parser for Maestro file format
+LICENSE=       mit
+
+USE_CMAKE=     yes
+USE_LANGUAGES= c c++
+
+
+.include "../../devel/boost-libs/buildlink3.mk"
+.include "../../devel/zlib/buildlink3.mk"
+.include "../../mk/bsd.pkg.mk"
Index: pkgsrc/biology/maeparser/PLIST
diff -u /dev/null pkgsrc/biology/maeparser/PLIST:1.1
--- /dev/null   Tue Nov  3 16:41:26 2020
+++ pkgsrc/biology/maeparser/PLIST      Tue Nov  3 16:41:26 2020
@@ -0,0 +1,13 @@
+@comment $NetBSD: PLIST,v 1.1 2020/11/03 16:41:26 bsiegert Exp $
+include/maeparser/Buffer.hpp
+include/maeparser/MaeBlock.hpp
+include/maeparser/MaeConstants.hpp
+include/maeparser/MaeParser.hpp
+include/maeparser/MaeParserConfig.hpp
+include/maeparser/Reader.hpp
+include/maeparser/Writer.hpp
+lib/cmake/maeparser-config-noconfig.cmake
+lib/cmake/maeparser-config.cmake
+lib/libmaeparser.so
+lib/libmaeparser.so.1
+lib/libmaeparser.so.${PKGVERSION}
Index: pkgsrc/biology/maeparser/buildlink3.mk
diff -u /dev/null pkgsrc/biology/maeparser/buildlink3.mk:1.1
--- /dev/null   Tue Nov  3 16:41:26 2020
+++ pkgsrc/biology/maeparser/buildlink3.mk      Tue Nov  3 16:41:26 2020
@@ -0,0 +1,15 @@
+# $NetBSD: buildlink3.mk,v 1.1 2020/11/03 16:41:26 bsiegert Exp $
+
+BUILDLINK_TREE+=       maeparser
+
+.if !defined(MAEPARSER_BUILDLINK3_MK)
+MAEPARSER_BUILDLINK3_MK:=
+
+BUILDLINK_API_DEPENDS.maeparser+=      maeparser>=1.2.4
+BUILDLINK_PKGSRCDIR.maeparser?=        ../../biology/maeparser
+
+.include "../../devel/boost-libs/buildlink3.mk"
+.include "../../devel/zlib/buildlink3.mk"
+.endif # MAEPARSER_BUILDLINK3_MK
+
+BUILDLINK_TREE+=       -maeparser
Index: pkgsrc/biology/maeparser/distinfo
diff -u /dev/null pkgsrc/biology/maeparser/distinfo:1.1
--- /dev/null   Tue Nov  3 16:41:26 2020
+++ pkgsrc/biology/maeparser/distinfo   Tue Nov  3 16:41:26 2020
@@ -0,0 +1,6 @@
+$NetBSD: distinfo,v 1.1 2020/11/03 16:41:26 bsiegert Exp $
+
+SHA1 (maeparser-1.2.4.tar.gz) = 51654efcd3ca8b9c027ac58e735ec6c313bfe087
+RMD160 (maeparser-1.2.4.tar.gz) = 595c8881aa1a368c8d6cfcd9af13076c58f9b403
+SHA512 (maeparser-1.2.4.tar.gz) = b8862099c725007b81e7da574fa1c9f1ae00481a6427a1ae7b07dda6043b9c08008fc9e352858e6830fb8cecc1cf70edb5681299e8c91050e9f0ad1606e527e3
+Size (maeparser-1.2.4.tar.gz) = 38285 bytes