CVS commit: pkgsrc/biology/biolibc

["Jason Bacon" <bacon%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   bacon
Date:           Wed Mar 24 15:20:08 UTC 2021

Added Files:
        pkgsrc/biology/biolibc: DESCR Makefile PLIST buildlink3.mk distinfo

Log Message:
biology/biolibc: import biolibc-0.1.1

Biolibc is a library of fast, memory-efficient, low-level functions for
processing biological data.  Like libc, it consists of numerous disparate,
general-purpose functions which could be used by a wide variety of
applications.  These include functions for streaming common file formats such
as SAM and VCF, string functions specific to bioinformatics, etc.


To generate a diff of this commit:
cvs rdiff -u -r0 -r1.1 pkgsrc/biology/biolibc/DESCR \
    pkgsrc/biology/biolibc/Makefile pkgsrc/biology/biolibc/PLIST \
    pkgsrc/biology/biolibc/buildlink3.mk pkgsrc/biology/biolibc/distinfo

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Added files:

Index: pkgsrc/biology/biolibc/DESCR
diff -u /dev/null pkgsrc/biology/biolibc/DESCR:1.1
--- /dev/null   Wed Mar 24 15:20:08 2021
+++ pkgsrc/biology/biolibc/DESCR        Wed Mar 24 15:20:08 2021
@@ -0,0 +1,5 @@
+Biolibc is a library of fast, memory-efficient, low-level functions for
+processing biological data.  Like libc, it consists of numerous disparate,
+general-purpose functions which could be used by a wide variety of
+applications.  These include functions for streaming common file formats such
+as SAM and VCF, string functions specific to bioinformatics, etc.
Index: pkgsrc/biology/biolibc/Makefile
diff -u /dev/null pkgsrc/biology/biolibc/Makefile:1.1
--- /dev/null   Wed Mar 24 15:20:08 2021
+++ pkgsrc/biology/biolibc/Makefile     Wed Mar 24 15:20:08 2021
@@ -0,0 +1,12 @@
+# $NetBSD: Makefile,v 1.1 2021/03/24 15:20:08 bacon Exp $
+
+DISTNAME=      biolibc-0.1.1
+CATEGORIES=    biology
+MASTER_SITES=  ${MASTER_SITE_GITHUB:=auerlab/}
+
+MAINTAINER=    bacon%NetBSD.org@localhost
+HOMEPAGE=      https://github.com/auerlab/biolibc
+COMMENT=       Low-level high-performance bioinformatics library
+LICENSE=       2-clause-bsd
+
+.include "../../mk/bsd.pkg.mk"
Index: pkgsrc/biology/biolibc/PLIST
diff -u /dev/null pkgsrc/biology/biolibc/PLIST:1.1
--- /dev/null   Wed Mar 24 15:20:08 2021
+++ pkgsrc/biology/biolibc/PLIST        Wed Mar 24 15:20:08 2021
@@ -0,0 +1,7 @@
+@comment $NetBSD: PLIST,v 1.1 2021/03/24 15:20:08 bacon Exp $
+include/biostring.h
+include/dsvio.h
+include/samio.h
+include/vcfio.h
+lib/libbiolibc.a
+man/man1/biolibc.1
Index: pkgsrc/biology/biolibc/buildlink3.mk
diff -u /dev/null pkgsrc/biology/biolibc/buildlink3.mk:1.1
--- /dev/null   Wed Mar 24 15:20:08 2021
+++ pkgsrc/biology/biolibc/buildlink3.mk        Wed Mar 24 15:20:08 2021
@@ -0,0 +1,13 @@
+# $NetBSD: buildlink3.mk,v 1.1 2021/03/24 15:20:08 bacon Exp $
+
+BUILDLINK_TREE+=       biolibc
+
+.if !defined(BIOLIBC_BUILDLINK3_MK)
+BIOLIBC_BUILDLINK3_MK:=
+
+BUILDLINK_API_DEPENDS.biolibc+=        biolibc>=0.1.1
+BUILDLINK_PKGSRCDIR.biolibc?=  ../../biology/biolibc
+BUILDLINK_DEPMETHOD.biolibc?=  build
+.endif # BIOLIBC_BUILDLINK3_MK
+
+BUILDLINK_TREE+=       -biolibc
Index: pkgsrc/biology/biolibc/distinfo
diff -u /dev/null pkgsrc/biology/biolibc/distinfo:1.1
--- /dev/null   Wed Mar 24 15:20:08 2021
+++ pkgsrc/biology/biolibc/distinfo     Wed Mar 24 15:20:08 2021
@@ -0,0 +1,6 @@
+$NetBSD: distinfo,v 1.1 2021/03/24 15:20:08 bacon Exp $
+
+SHA1 (biolibc-0.1.1.tar.gz) = 7c5861ebfd97dd6d92a489297244debe3c48af05
+RMD160 (biolibc-0.1.1.tar.gz) = 95b9fce0efe0c68be43bea5f875a72efce98f58e
+SHA512 (biolibc-0.1.1.tar.gz) = 673fa88ab48bbbcd5d3256a244472fdaa2c76fc5c0fa78663179487f8d8e9c65aaff593220859a54ed6e17f76a080cabe7e5866d12ab3948996e28b0d05d12bc
+Size (biolibc-0.1.1.tar.gz) = 11770 bytes