CVS commit: pkgsrc/biology/ad2vcf

["Jason Bacon" <bacon%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   bacon
Date:           Wed Mar 24 18:19:21 UTC 2021

Added Files:
        pkgsrc/biology/ad2vcf: DESCR Makefile PLIST distinfo

Log Message:
biology/ad2vcf: import ad2vcf-0.1.2

ad2vdf extracts allelic depth info from a SAM stream and adds it to a
corresponding single-sample VCF file.


To generate a diff of this commit:
cvs rdiff -u -r0 -r1.1 pkgsrc/biology/ad2vcf/DESCR \
    pkgsrc/biology/ad2vcf/Makefile pkgsrc/biology/ad2vcf/PLIST \
    pkgsrc/biology/ad2vcf/distinfo

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Added files:

Index: pkgsrc/biology/ad2vcf/DESCR
diff -u /dev/null pkgsrc/biology/ad2vcf/DESCR:1.1
--- /dev/null   Wed Mar 24 18:19:21 2021
+++ pkgsrc/biology/ad2vcf/DESCR Wed Mar 24 18:19:21 2021
@@ -0,0 +1,2 @@
+ad2vdf extracts allelic depth info from a SAM stream and adds it to a
+corresponding single-sample VCF file.
Index: pkgsrc/biology/ad2vcf/Makefile
diff -u /dev/null pkgsrc/biology/ad2vcf/Makefile:1.1
--- /dev/null   Wed Mar 24 18:19:21 2021
+++ pkgsrc/biology/ad2vcf/Makefile      Wed Mar 24 18:19:21 2021
@@ -0,0 +1,19 @@
+# $NetBSD: Makefile,v 1.1 2021/03/24 18:19:21 bacon Exp $
+
+DISTNAME=      ad2vcf-0.1.2
+CATEGORIES=    biology
+MASTER_SITES=  ${MASTER_SITE_GITHUB:=auerlab/}
+
+MAINTAINER=    bacon%NetBSD.org@localhost
+HOMEPAGE=      https://github.com/auerlab/ad2vcf
+COMMENT=       Add allelic depth info from a SAM stream to a VCF file
+LICENSE=       2-clause-bsd
+
+pre-build:
+       cd ${WRKSRC} && ${MAKE} PREFIX=${PREFIX} depend
+
+do-test:
+       cd ${WRKSRC}/Test && ./run-test.sh
+
+.include "../../biology/biolibc/buildlink3.mk"
+.include "../../mk/bsd.pkg.mk"
Index: pkgsrc/biology/ad2vcf/PLIST
diff -u /dev/null pkgsrc/biology/ad2vcf/PLIST:1.1
--- /dev/null   Wed Mar 24 18:19:21 2021
+++ pkgsrc/biology/ad2vcf/PLIST Wed Mar 24 18:19:21 2021
@@ -0,0 +1,3 @@
+@comment $NetBSD: PLIST,v 1.1 2021/03/24 18:19:21 bacon Exp $
+bin/ad2vcf
+man/man1/ad2vcf.1
Index: pkgsrc/biology/ad2vcf/distinfo
diff -u /dev/null pkgsrc/biology/ad2vcf/distinfo:1.1
--- /dev/null   Wed Mar 24 18:19:21 2021
+++ pkgsrc/biology/ad2vcf/distinfo      Wed Mar 24 18:19:21 2021
@@ -0,0 +1,6 @@
+$NetBSD: distinfo,v 1.1 2021/03/24 18:19:21 bacon Exp $
+
+SHA1 (ad2vcf-0.1.2.tar.gz) = 15e8e90122003d2bc83542414ba65e4fa40182ae
+RMD160 (ad2vcf-0.1.2.tar.gz) = 7e98382c79935f46ae259bd879b499966a470cb7
+SHA512 (ad2vcf-0.1.2.tar.gz) = 64db184331207b00659909af219deb9dc352fad64f066e29fc7fabc28f3a60a9209319e589999cdb66551f267d1405d5be6f221c0147da33b4d924e87bec4ad3
+Size (ad2vcf-0.1.2.tar.gz) = 15204 bytes