CVS commit: pkgsrc/biology/biolibc-tools

["Jason Bacon" <bacon%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   bacon
Date:           Tue Dec 13 00:53:43 UTC 2022

Modified Files:
        pkgsrc/biology/biolibc-tools: Makefile PLIST distinfo

Log Message:
biology/biolibc-tools: Update to 0.1.4

Add deromanize subcommand to convert Roman numeral chromosome IDs
fastx-stats: Report standard deviation for read length

Changes:    https://github.com/auerlab/biolibc-tools/releases


To generate a diff of this commit:
cvs rdiff -u -r1.4 -r1.5 pkgsrc/biology/biolibc-tools/Makefile \
    pkgsrc/biology/biolibc-tools/PLIST
cvs rdiff -u -r1.6 -r1.7 pkgsrc/biology/biolibc-tools/distinfo

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/biology/biolibc-tools/Makefile
diff -u pkgsrc/biology/biolibc-tools/Makefile:1.4 pkgsrc/biology/biolibc-tools/Makefile:1.5
--- pkgsrc/biology/biolibc-tools/Makefile:1.4   Sat Jun 11 19:44:45 2022
+++ pkgsrc/biology/biolibc-tools/Makefile       Tue Dec 13 00:53:43 2022
@@ -1,6 +1,6 @@
-# $NetBSD: Makefile,v 1.4 2022/06/11 19:44:45 bacon Exp $
+# $NetBSD: Makefile,v 1.5 2022/12/13 00:53:43 bacon Exp $
 
-DISTNAME=      biolibc-tools-0.1.3
+DISTNAME=      biolibc-tools-0.1.4
 CATEGORIES=    biology
 MASTER_SITES=  ${MASTER_SITE_GITHUB:=auerlab/}
 
@@ -13,6 +13,8 @@ BUILD_TARGET= depend all
 MAKE_ENV+=     VERSION=${PKGVERSION}
 INSTALL_TARGET=        install-strip
 
+LDFLAGS.SunOS+=                -lresolv -lsocket -lnsl
+
 pre-build:
        cd ${WRKSRC} && ${MAKE} PREFIX=${PREFIX} depend
 
Index: pkgsrc/biology/biolibc-tools/PLIST
diff -u pkgsrc/biology/biolibc-tools/PLIST:1.4 pkgsrc/biology/biolibc-tools/PLIST:1.5
--- pkgsrc/biology/biolibc-tools/PLIST:1.4      Sat Jun 11 19:44:45 2022
+++ pkgsrc/biology/biolibc-tools/PLIST  Tue Dec 13 00:53:43 2022
@@ -1,6 +1,7 @@
-@comment $NetBSD: PLIST,v 1.4 2022/06/11 19:44:45 bacon Exp $
+@comment $NetBSD: PLIST,v 1.5 2022/12/13 00:53:43 bacon Exp $
 bin/blt
 libexec/biolibc-tools/chrom-lens
+libexec/biolibc-tools/deromanize
 libexec/biolibc-tools/ensemblid2gene
 libexec/biolibc-tools/extract-seq
 libexec/biolibc-tools/fasta2seq
@@ -14,6 +15,7 @@ libexec/biolibc-tools/uniq-seqs.awk
 libexec/biolibc-tools/vcf-downsample
 libexec/biolibc-tools/vcf-search
 man/man1/blt-chrom-lens.1
+man/man1/blt-deromanize.1
 man/man1/blt-ensemblid2gene.1
 man/man1/blt-extract-seq.1
 man/man1/blt-fasta2seq.1

Index: pkgsrc/biology/biolibc-tools/distinfo
diff -u pkgsrc/biology/biolibc-tools/distinfo:1.6 pkgsrc/biology/biolibc-tools/distinfo:1.7
--- pkgsrc/biology/biolibc-tools/distinfo:1.6   Sat Jun 11 19:44:45 2022
+++ pkgsrc/biology/biolibc-tools/distinfo       Tue Dec 13 00:53:43 2022
@@ -1,5 +1,5 @@
-$NetBSD: distinfo,v 1.6 2022/06/11 19:44:45 bacon Exp $
+$NetBSD: distinfo,v 1.7 2022/12/13 00:53:43 bacon Exp $
 
-BLAKE2s (biolibc-tools-0.1.3.tar.gz) = 923b3f7794526c2f79decb1cb1dcadb6c742cc6bae77ff0c8543726ec42d2c64
-SHA512 (biolibc-tools-0.1.3.tar.gz) = 7bf2570c1635b4a363c58a1a7b7c1b9dccd4ac135be06dd6207c0e7c555a15847d3de95ea8fc94541cdabc1625e0d9a665a1473bc80709df7756fc2f8345da9e
-Size (biolibc-tools-0.1.3.tar.gz) = 27735 bytes
+BLAKE2s (biolibc-tools-0.1.4.tar.gz) = b428abaa6fcb018ad801d90d7aafdc3d1832026dac9c405a8f95a3cf917d02cd
+SHA512 (biolibc-tools-0.1.4.tar.gz) = 9e21ddaa28bef87815fc3251eea7241fd1f2c887403e5aafc5757a92a673e5109f0946b926dd4b6dfcc054390e2a4427dd1ba92043132996acbdc8ab1e9b5dcc
+Size (biolibc-tools-0.1.4.tar.gz) = 28878 bytes