CVS commit: pkgsrc/math/R-igraph

["Makoto Fujiwara" <mef%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   mef
Date:           Sun Jun 11 02:48:20 UTC 2023

Modified Files:
        pkgsrc/math/R-igraph: Makefile distinfo

Log Message:
(math/R-igraph) Updated 1.4.1 to 1.4.3

# igraph 1.4.3

## Internal

  - Fix tests for dev waldo (#779, @hadley).

  - Fix linking on Windows: gfortran needs quadmath. (#778).

## Documentation

  - Mention limitation of Pajek reader (#776).

# igraph 1.4.2

## Breaking changes

- Remove `igraph.eigen.default()` and `eigen_defaults`, introduce
  internal `eigen_defaults()` as a function (#741).

- Remove broken `nexus*()` functions (#705), and `srand()` (#701).

## C core

- Update C core.

- ARPACK-based calculations are now interruptible.

- `shortest_paths()` and `all_shortest_paths()` no longer crash when
  an invalid `from` vertex is passed and weights are being used.

See
[diff](https://github.com/igraph/igraph/compare/87c70998344a39b44218f7af903bf62b8bbf3e71...98304787bc811bf709be5aeddea7b570c370988e)
for details.

## Printing

- Use true vertex names for printing vertex sets. If a vertex set
  captures a relationship between vertices (e.g., the `father`
  component of `bfs()`), the vertex set is printed as a named vector
  (#754).

- Suggest restarting R session after fatal error (#745).

## Bug fixes

- `as_long_data_frame()` now correctly processes vertex attributes and
  works with graphs without vertex attributes (#748).

- `as.hclust(hrg.fit(g))` works again (#721).

## Documentation

- The documentation is now available at <https://igraph.org/> (#743).

- Reorganize function reference (#662).

- Replace `graph()` with `make_graph()` in examples (#738).

- Add docs for `as.hclust.igraphHRG()` (#733).

- Merged man page of `hub_score()` and `authority_score()` (#698).

- Refactor contributors listing (#647).

- Improve "family" titles (#679).

- Improve docs of ego/neighborhood functions.

- Improve `transitivity()` docs.

## Internal

- Introduce cpp11 package to improve error handling in the long run (#720).

- Avoid longjmp for error handling and interrupts (#751).

- `as.hclust.igraphHRG` uses `.Call()` interface (#727).


To generate a diff of this commit:
cvs rdiff -u -r1.15 -r1.16 pkgsrc/math/R-igraph/Makefile
cvs rdiff -u -r1.8 -r1.9 pkgsrc/math/R-igraph/distinfo

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/math/R-igraph/Makefile
diff -u pkgsrc/math/R-igraph/Makefile:1.15 pkgsrc/math/R-igraph/Makefile:1.16
--- pkgsrc/math/R-igraph/Makefile:1.15  Wed Apr 19 08:10:44 2023
+++ pkgsrc/math/R-igraph/Makefile       Sun Jun 11 02:48:20 2023
@@ -1,8 +1,7 @@
-# $NetBSD: Makefile,v 1.15 2023/04/19 08:10:44 adam Exp $
+# $NetBSD: Makefile,v 1.16 2023/06/11 02:48:20 mef Exp $
 
 R_PKGNAME=     igraph
-R_PKGVER=      1.4.1
-PKGREVISION=   1
+R_PKGVER=      1.4.3
 CATEGORIES=    math graphics
 
 MAINTAINER=    minskim%NetBSD.org@localhost
@@ -26,6 +25,7 @@ TEST_DEPENDS+=        R-withr-[0-9]*:../../deve
 
 USE_LANGUAGES= c c++ fortran
 
-.include "../../math/R/Makefile.extension"
 .include "../../textproc/libxml2/buildlink3.mk"
+.include "../../lang/R-cpp11/buildlink3.mk"
+.include "../../math/R/Makefile.extension"
 .include "../../mk/bsd.pkg.mk"

Index: pkgsrc/math/R-igraph/distinfo
diff -u pkgsrc/math/R-igraph/distinfo:1.8 pkgsrc/math/R-igraph/distinfo:1.9
--- pkgsrc/math/R-igraph/distinfo:1.8   Sat Mar 11 11:07:54 2023
+++ pkgsrc/math/R-igraph/distinfo       Sun Jun 11 02:48:20 2023
@@ -1,6 +1,6 @@
-$NetBSD: distinfo,v 1.8 2023/03/11 11:07:54 mef Exp $
+$NetBSD: distinfo,v 1.9 2023/06/11 02:48:20 mef Exp $
 
-BLAKE2s (R/igraph_1.4.1.tar.gz) = c2d4ddcb45eea169ac352b46b665d0199bb3b932b7e67e580a222d2d261ba472
-SHA512 (R/igraph_1.4.1.tar.gz) = c3913044b8bf00f6b3e52e20aac3275ffef07a6271b66a93eb1458898e8edfd25a9f35902ecfe8f70b0e3b5cd5e605c5cd2605f38a55ecc42849fd4fb73b1af4
-Size (R/igraph_1.4.1.tar.gz) = 2910158 bytes
+BLAKE2s (R/igraph_1.4.3.tar.gz) = 87f4097f7e13c8aa2f80ae60e1a9ed4ba2007237aad974281ab9264ab7fd33cd
+SHA512 (R/igraph_1.4.3.tar.gz) = aab982e04630d3064729e3982a2ef3f629bb0d70dd195390cf81a82dade6aa4ac1083f231dd5c9586997862eddcbf90d9ddcecf5526dc603f438b3659aaa98c6
+Size (R/igraph_1.4.3.tar.gz) = 3305746 bytes
 SHA1 (patch-src_vendor_plfit_hzeta.c) = 06c895e951bc491bfb26376a4000e4204811748f