CVS commit: pkgsrc/math/R-survey

["Makoto Fujiwara" <mef%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   mef
Date:           Sun Nov 24 05:23:25 UTC 2024

Modified Files:
        pkgsrc/math/R-survey: Makefile distinfo

Log Message:
(math/R-survey) Updated 4.2.0 to 4.4.2

4.4-2   Invalid read in C++ code, found by Brian Ripley, fixed by Ben Schneider

        Updated small-area vignette (Peter Gao)

4.4-1   CRAN

4.4     Fixes to calibration for PPS sampling

        A PPS variance matrix can now be specified as phase two of a two-phase design.
        This includes poisson_sampling() as a model for non-response (for Pam Shaw, Jasper Yang)

        svysmoothUnit() and svysmoothArea() as an interface to the SUMMER package for small-area
        estimation (Peter Gao, Jon Wakefield, Richard Li)

4.3     Added Ben Schneider's C++ code for multistage variances. It is currently controlled
        by options(survey.use_rcpp), which defaults to TRUE

        error in scaling Pearson residuals for svyrepglm led to confint.svrepglm with
        likelihood profiling not finding the ends of the interval (Stephanie Zimmer)

        svyolr with rank deficiency and subsetting of cases in raked designs was overwriting
        the 'keep' variable (Justin Wishart)

        print.svyciprop() was printing fewer digits for the upper CI limit than the
        lower limit.

        C++ code issues fixed

        degrees of freedom for score F-test in loglinear models fixed (Thomas Loughin)

        correct the scale in the F-distributed score test (Keiran Shao)

        allow user to specify degf= in svrepdesign to avoid needing to compute it
        (for Ben Schneider)

        warn if svychisq() is used with a single variable (for Isabelle Michaud)

        fix svyglm(rescale=FALSE) for replicate weights


To generate a diff of this commit:
cvs rdiff -u -r1.4 -r1.5 pkgsrc/math/R-survey/Makefile
cvs rdiff -u -r1.5 -r1.6 pkgsrc/math/R-survey/distinfo

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/math/R-survey/Makefile
diff -u pkgsrc/math/R-survey/Makefile:1.4 pkgsrc/math/R-survey/Makefile:1.5
--- pkgsrc/math/R-survey/Makefile:1.4   Fri Jun  2 13:42:34 2023
+++ pkgsrc/math/R-survey/Makefile       Sun Nov 24 05:23:25 2024
@@ -1,7 +1,7 @@
-# $NetBSD: Makefile,v 1.4 2023/06/02 13:42:34 mef Exp $
+# $NetBSD: Makefile,v 1.5 2024/11/24 05:23:25 mef Exp $
 
 R_PKGNAME=     survey
-R_PKGVER=      4.2-1
+R_PKGVER=      4.4-2
 
 MAINTAINER=    pkgsrc-users%NetBSD.org@localhost
 COMMENT=       Analysis of complex survey samples
@@ -9,14 +9,17 @@ LICENSE=      gnu-gpl-v2 OR gnu-gpl-v3
 
 DEPENDS+=      R-minqa>=1.2.4:../../math/R-minqa
 DEPENDS+=      R-mitools>=2.4:../../math/R-mitools
-DEPENDS+=      R-numDeriv>=2016.8.1.1:../../math/R-numDeriv
+DEPENDS+=      R-numDeriv-[0-9]*:../../math/R-numDeriv
+
+# Packages suggested but not available:
+#   'CompQuadForm', 'AER', 'SUMMER', 'R.rsp'
 
-# Packages suggested but not available: 'CompQuadForm', 'AER'
 TEST_DEPENDS+= R-hexbin-[0-9]*:../../math/R-hexbin
 TEST_DEPENDS+= R-RSQLite-[0-9]*:../../databases/R-RSQLite
 TEST_DEPENDS+= R-quantreg-[0-9]*:../../math/R-quantreg
 
-USE_LANGUAGES= # none
+USE_LANGUAGES= c++
 
+.include "../../math/R-RcppArmadillo/buildlink3.mk"
 .include "../../math/R/Makefile.extension"
 .include "../../mk/bsd.pkg.mk"

Index: pkgsrc/math/R-survey/distinfo
diff -u pkgsrc/math/R-survey/distinfo:1.5 pkgsrc/math/R-survey/distinfo:1.6
--- pkgsrc/math/R-survey/distinfo:1.5   Fri Jun  2 13:42:34 2023
+++ pkgsrc/math/R-survey/distinfo       Sun Nov 24 05:23:25 2024
@@ -1,5 +1,5 @@
-$NetBSD: distinfo,v 1.5 2023/06/02 13:42:34 mef Exp $
+$NetBSD: distinfo,v 1.6 2024/11/24 05:23:25 mef Exp $
 
-BLAKE2s (R/survey_4.2-1.tar.gz) = ee84dd9b95c6aa482d49ae97498811de6de272aa0fc9cd8b88dae73ba0086a7b
-SHA512 (R/survey_4.2-1.tar.gz) = bb60ebf12aa027fac64596c6770c3cf98aa9a04ca3a87fc9d54e5b1aa583f27f447708039298bd139b324938ed18c560ad6f8cbd8315c0eeb44a0ef3ed79679e
-Size (R/survey_4.2-1.tar.gz) = 2153349 bytes
+BLAKE2s (R/survey_4.4-2.tar.gz) = 62fae78306d03f9a1c0d4d05a556f63f6760bd6369631d612984dbb43db7e83c
+SHA512 (R/survey_4.4-2.tar.gz) = e9648cb482e2b5a8edefd609c5faa0305a43a5a9d91dcd0dd27e8275252486126320cc60ed2f899c016fa2aced8682bb75649a3386a936f0981256a5d8f41746
+Size (R/survey_4.4-2.tar.gz) = 2341313 bytes