CVS commit: pkgsrc/geography/R-spatstat.explore

["Makoto Fujiwara" <mef%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   mef
Date:           Sun Dec  1 08:56:26 UTC 2024

Modified Files:
        pkgsrc/geography/R-spatstat.explore: Makefile distinfo

Log Message:
(geography/R-spatstat.explore) Updated 3.2.5 to 3.3.3

        CHANGES IN spatstat.explore VERSION 3.3-3

OVERVIEW

    o relative risk estimation using diffusion.

    o smoothing using diffusion.

    o Tweaks to bandwidth selection.

NEW FUNCTIONS

    o relriskHeat, relriskHeat.ppp
    Relative risk estimation using diffusion.

    o blurHeat, blurHeat.im
    Image smoothing using diffusion.

    o SmoothHeat, SmoothHeat.ppp
    Smoothing numerical values observed at points, using diffusion.

    o bw.relriskHeatppp
    Bandwidth selection for relriskHeat.ppp

SIGNIFICANT USER-VISIBLE CHANGES

    o bw.ppl
    Argument 'shortcut' now defaults to TRUE.

        CHANGES IN spatstat.explore VERSION 3.3-2

OVERVIEW

    o Tweaks to documentation.

    o Internal repairs.

    o Internal changes to satisfy package checker.

        CHANGES IN spatstat.explore VERSION 3.3-1

OVERVIEW

    o Internal changes to satisfy package checker.

        CHANGES IN spatstat.explore VERSION 3.3-0

OVERVIEW

    o 'spatstat.explore' now depends on package 'spatstat.univar'.

    o Some functions have been moved to 'spatstat.univar'.

    o Minor improvements.

PACKAGE DEPENDENCE

    o spatstat.explore now depends on the new package 'spatstat.univar'

    o Some functions have been moved
    from 'spatstat.explore' to 'spatstat.univar'.

SIGNIFICANT USER-VISIBLE CHANGES

    o cbind.fv, bind.fv
    Additional arguments may be functions in the R language.

DELETED FUNCTIONS

    o bw.abram
    The generic 'bw.abram' has been moved
    to the new package 'spatstat.univar'.

    o CDF, CDF.density
    The generic 'CDF' and method 'CDF.density' have been moved
    to the new package 'spatstat.univar'.

    o densityAdaptiveKernel
    The generic 'densityAdaptiveKernel' has been moved
    to the new package 'spatstat.univar'.

    o dkernel, pkernel, qkernel, rkernel
    These functions have been moved to the new package 'spatstat.univar'.

    o kernel.factor, kernel.moment, kernel.squint
    These functions have been moved to the new package 'spatstat.univar'.

    o kaplan.meier, reduced.sample, km.rs
    These functions have been moved to the new package 'spatstat.univar'.

    o quantile.density
    This method has been moved to the new package 'spatstat.univar'.

    o stieltjes
    This function has been moved to the new package 'spatstat.univar'.

        CHANGES IN spatstat.explore VERSION 3.2-7

OVERVIEW

    o Bug fixes.

    o Internal improvements.

BUG FIXES

    o SpatialMedian.ppp, SpatialQuantile.ppp
    Argument `sigma' was ignored in some calculations.
    Fixed.

        CHANGES IN spatstat.explore VERSION 3.2-6

OVERVIEW

    o We thank Mohomed Abraj, Marcelino de la Cruz and Stephanie Hogg
      for contributions.

    o Spatially weighted median and quantile of mark values.

    o Adaptive estimation of intensity for split point patterns.

    o Anisotropic bandwidth selection

    o Boyce index.

    o Internal improvements.

    o Bug fixes.

NEW FUNCTIONS

    o SpatialMedian.ppp, SpatialQuantile.ppp
    Spatially weighted median and quantile of mark values of a point pattern.

    o boyce
    Boyce index and continuous Boyce index.

    o densityAdaptiveKernel.splitppp
    A method for 'densityAdaptiveKernel' for split point patterns.

SIGNIFICANT USER-VISIBLE CHANGES

    o bw.ppl
    New argument `varcov1' for anisotropic bandwidth selection.

    o bw.smoothppp
    New argument `varcov1' for anisotropic bandwidth selection.

BUG FIXES

    o studpermu.test
    The code required each group to consist of at least 3 point patterns,
    rather than 2 point patterns (as stated in the documentation).
    Fixed.

    o Jest
    Ignored pixel resolution argument 'eps'.
    Fixed.

    o scanLRTS
    Pixel resolution arguments 'dimyx', 'eps', 'xy' were not correctly handled.
    Fixed.


To generate a diff of this commit:
cvs rdiff -u -r1.1 -r1.2 pkgsrc/geography/R-spatstat.explore/Makefile \
    pkgsrc/geography/R-spatstat.explore/distinfo

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/geography/R-spatstat.explore/Makefile
diff -u pkgsrc/geography/R-spatstat.explore/Makefile:1.1 pkgsrc/geography/R-spatstat.explore/Makefile:1.2
--- pkgsrc/geography/R-spatstat.explore/Makefile:1.1    Sat Jan 13 23:22:51 2024
+++ pkgsrc/geography/R-spatstat.explore/Makefile        Sun Dec  1 08:56:26 2024
@@ -1,7 +1,7 @@
-# $NetBSD: Makefile,v 1.1 2024/01/13 23:22:51 mef Exp $
+# $NetBSD: Makefile,v 1.2 2024/12/01 08:56:26 mef Exp $
 
 R_PKGNAME=     spatstat.explore
-R_PKGVER=      3.2-5
+R_PKGVER=      3.3-3
 CATEGORIES=    geography
 
 MAINTAINER=    pkgsrc-users%NetBSD.org@localhost
@@ -11,7 +11,7 @@ LICENSE=      gnu-gpl-v2 OR gnu-gpl-v3
 DEPENDS+=      R-spatstat.data>=3.0.1:../../geography/R-spatstat.data
 DEPENDS+=      R-spatstat.geom>=3.2.7:../../geography/R-spatstat.geom
 DEPENDS+=      R-spatstat.random>=3.2.1:../../geography/R-spatstat.random
-DEPENDS+=      R-spatstat.sparse>=3.0.1:../../geography/R-spatstat.sparse
+DEPENDS+=      R-spatstat.sparse>=3.1.0:../../geography/R-spatstat.sparse
 #EPENDS+=      R-spatstat.utils>=3.0.3:../../geography/R-spatstat.utils
 DEPENDS+=      R-abind>=1.4.5:../../math/R-abind
 DEPENDS+=      R-goftest>=1.2.2:../../math/R-goftest
Index: pkgsrc/geography/R-spatstat.explore/distinfo
diff -u pkgsrc/geography/R-spatstat.explore/distinfo:1.1 pkgsrc/geography/R-spatstat.explore/distinfo:1.2
--- pkgsrc/geography/R-spatstat.explore/distinfo:1.1    Sat Jan 13 23:22:51 2024
+++ pkgsrc/geography/R-spatstat.explore/distinfo        Sun Dec  1 08:56:26 2024
@@ -1,5 +1,5 @@
-$NetBSD: distinfo,v 1.1 2024/01/13 23:22:51 mef Exp $
+$NetBSD: distinfo,v 1.2 2024/12/01 08:56:26 mef Exp $
 
-BLAKE2s (R/spatstat.explore_3.2-5.tar.gz) = 087e9218dcfdc67d678d5d0e137a1571e5b82882baa8dfcb07baf8e72b3300b4
-SHA512 (R/spatstat.explore_3.2-5.tar.gz) = 1dd138cacedb21aea60f695cd03398c32bf6fcd3bac360d842ad90d0e8d1390f1a009244164919c7367eb70790d3421f550e1f45d1aa696beb811a999a55fc83
-Size (R/spatstat.explore_3.2-5.tar.gz) = 764704 bytes
+BLAKE2s (R/spatstat.explore_3.3-3.tar.gz) = 31037cfb7872b9d57b3e5e900c228abbf87f6762c8e5f78eb720440c2154b95a
+SHA512 (R/spatstat.explore_3.3-3.tar.gz) = e88d3cc50e0337d9b73aec32fd02fcd8cc0256e3803150ce01d9e944261253e488ee9d05f2b690bfd21c6e2c150625700d2b6e9dd3ce969e83e96c105fa34001
+Size (R/spatstat.explore_3.3-3.tar.gz) = 668106 bytes