CVS commit: pkgsrc/biology/openbabel

["Thomas Klausner" <wiz%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   wiz
Date:           Fri Jan 31 15:49:48 UTC 2025

Modified Files:
        pkgsrc/biology/openbabel: distinfo
Added Files:
        pkgsrc/biology/openbabel/patches: patch-CMakeLists.txt
            patch-tools_CMakeLists.txt

Log Message:
openbabel: fix build


To generate a diff of this commit:
cvs rdiff -u -r1.14 -r1.15 pkgsrc/biology/openbabel/distinfo
cvs rdiff -u -r0 -r1.1 pkgsrc/biology/openbabel/patches/patch-CMakeLists.txt \
    pkgsrc/biology/openbabel/patches/patch-tools_CMakeLists.txt

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/biology/openbabel/distinfo
diff -u pkgsrc/biology/openbabel/distinfo:1.14 pkgsrc/biology/openbabel/distinfo:1.15
--- pkgsrc/biology/openbabel/distinfo:1.14      Tue Oct 26 10:03:42 2021
+++ pkgsrc/biology/openbabel/distinfo   Fri Jan 31 15:49:47 2025
@@ -1,6 +1,8 @@
-$NetBSD: distinfo,v 1.14 2021/10/26 10:03:42 nia Exp $
+$NetBSD: distinfo,v 1.15 2025/01/31 15:49:47 wiz Exp $
 
 BLAKE2s (openbabel-3.1.1.tar.gz) = 2fd0893c0788fac515338c97961c2671e98286ac7395b8fcd2b3a01311bb0d88
 SHA512 (openbabel-3.1.1.tar.gz) = d46807e8f4e2f0f691e69943e5c5eda9c271271cfca6f66b6df136bbf384502fd3b65a4adf134a4e9e1f2452e1316c9515aa92292b73205b9eb4d7e4d7a85f18
 Size (openbabel-3.1.1.tar.gz) = 36688499 bytes
+SHA1 (patch-CMakeLists.txt) = 2e7755e1660bcef9bde654481056f95739cac384
 SHA1 (patch-cmake_modules_Findcoordgen.cmake) = 5906ee8b00a60640a0a9cfd0481f674bea419ad1
+SHA1 (patch-tools_CMakeLists.txt) = 0ab3d883bce1d9d3dae7155b336f48999615bc1c

Added files:

Index: pkgsrc/biology/openbabel/patches/patch-CMakeLists.txt
diff -u /dev/null pkgsrc/biology/openbabel/patches/patch-CMakeLists.txt:1.1
--- /dev/null   Fri Jan 31 15:49:48 2025
+++ pkgsrc/biology/openbabel/patches/patch-CMakeLists.txt       Fri Jan 31 15:49:47 2025
@@ -0,0 +1,33 @@
+$NetBSD: patch-CMakeLists.txt,v 1.1 2025/01/31 15:49:47 wiz Exp $
+
+Remove obsolete variable.
+
+--- CMakeLists.txt.orig        2025-01-31 15:47:24.131445152 +0000
++++ CMakeLists.txt
+@@ -344,7 +344,7 @@ elseif(HAVE_STD_TR1_SHARED_PTR_IN_TR1_HE
+ else()
+   find_package(Boost)
+   if(Boost_FOUND)
+-    include_directories(${Boost_INCLUDE_DIRS} ${Boost_INCLUDE_DIR})
++    include_directories(${Boost_INCLUDE_DIRS})
+     add_definitions(-DUSE_BOOST -DHAVE_SHARED_POINTER)
+     set(SHARED_POINTER true)
+   else()
+@@ -357,7 +357,7 @@ message(STATUS "Use ${OB_SHARED_PTR_IMPL
+ 
+ find_package(Boost COMPONENTS program_options iostreams)
+   if(Boost_FOUND)
+-    include_directories(${Boost_INCLUDE_DIRS} ${Boost_INCLUDE_DIR})
++    include_directories(${Boost_INCLUDE_DIRS})
+  endif()
+ 
+ # Intel C++ Compiler
+@@ -472,7 +472,7 @@ endif()
+ 
+ find_package(Boost COMPONENTS filesystem iostreams unit_test_framework)
+ if(Boost_FOUND)
+-  include_directories(${Boost_INCLUDE_DIRS} ${Boost_INCLUDE_DIR})
++  include_directories(${Boost_INCLUDE_DIRS})
+   option(WITH_MAEPARSER "Build Maestro support" ON)
+   if(BUILD_SHARED)
+     option(WITH_COORDGEN "Build Coordgen support" ON)
Index: pkgsrc/biology/openbabel/patches/patch-tools_CMakeLists.txt
diff -u /dev/null pkgsrc/biology/openbabel/patches/patch-tools_CMakeLists.txt:1.1
--- /dev/null   Fri Jan 31 15:49:48 2025
+++ pkgsrc/biology/openbabel/patches/patch-tools_CMakeLists.txt Fri Jan 31 15:49:47 2025
@@ -0,0 +1,15 @@
+$NetBSD: patch-tools_CMakeLists.txt,v 1.1 2025/01/31 15:49:47 wiz Exp $
+
+Remove obsolete variable.
+
+--- tools/CMakeLists.txt.orig  2025-01-31 15:47:10.271879998 +0000
++++ tools/CMakeLists.txt
+@@ -5,7 +5,7 @@ if(MINIMAL_BUILD)
+ else(MINIMAL_BUILD)
+   find_package(Boost COMPONENTS program_options iostreams)
+   if(Boost_FOUND)
+-    include_directories(${Boost_INCLUDE_DIRS} ${Boost_INCLUDE_DIR})
++    include_directories(${Boost_INCLUDE_DIRS})
+   endif()
+ 
+