CVS commit: pkgsrc/math/R

["Makoto Fujiwara" <mef%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   mef
Date:           Sun Mar  2 10:26:38 UTC 2025

Modified Files:
        pkgsrc/math/R: Makefile distinfo
Removed Files:
        pkgsrc/math/R/patches: patch-configure.ac
            patch-src_include_R__ext_Error.h

Log Message:
(math/R) Updated 4.4.2 to 4.4.3

CHANGES IN R 4.4.3:

  INSTALLATION:

         * R can be installed using C23 (for example with '-std=gnu23'
           or '-std=gnu2x') with recent compilers including 'gcc'
           12-14, Apple 'clang' 15-16, LLVM 'clang' 17-20 and Intel
           'icx' 2024.2.

           It can be installed with the upcoming (at the time of
           writing) 'gcc' 15, which defaults to C23.

  C-LEVEL FACILITIES:

         * The functions 'R_strtod' and 'R_atof' now allow hexadecimal
           constants without an exponent, for compatibility with their
           C99 versions (PR#18805).

  UTILITIES:

         * 'R CMD build' and 'R CMD check' now allow reference output
           for demo scripts ('demo/<demo>.Rout.save' files) to be
           shipped with the package, as proposed by Torsten Hothorn in
           PR#18816.

  BUG FIXES:

         * 'kappa(A, exact=TRUE)' for singular 'A' returns 'Inf' more
           generally, fixing PR#18817 reported by Mikael Jagan.

         * Fixed URLs of the sun spots ('sunspot.month' etc) data sets
           and mention future changes due to recalibration.

         * The parser now accepts hexadecimal constants with a decimal
           point without an exponent (taken as 'p0') as documented in
           '?NumericConstants' (PR#18819).

         * 'rbind()' now works correctly when inputs include a raw
           vector and a logical, integer or double vector - previously
           the inclusion of the latter was garbled.

         * 'smooth.spline()' checks validity of its arguments
           'df.offset' and 'penalty': it could segfault if they were
           'NULL'.

         * 'isGeneric(<primitive>, fdef=*, getName=TRUE)' now also
           returns the name instead of just 'TRUE', fixing PR#18829
           reported by Mikael Jagan.

         * 'isGeneric(fdef = print)' now works, fixing PR#18369 thanks
           to Mikael Jagan.

         * 'sort(x, method = "qsort")' made illegal accesses when 'x'
           has length 0.

         * 'dir.create()' is protected against being passed an empty
           string as its 'path' argument.

         * Silent integer overflow could occur in the 'exact'
           computations for 'fisher.test()' for unrealistic inputs:
           this is now an error.

         * Some invalid C-level memory accesses are avoided for
           'loglin(, margin = NULL)'.

           'loglin(, param = TRUE)' no longer gives an error in corner
           cases such as a one-dimensional input.

         * 'dev.capabilities() $ events' now reports '"Idle"' if the
           device provides it, fixing PR#18836, thanks to Trevor Davis.

         * 'arima(.., seasonal = <wrong-vector>)' correctly errors now,
           ditto for 'arima0()', thanks to Norbert Kuder's report on
           the R-devel list.

         * 'binomial(<link>)$linkinv(eta)' and '.. $mu.eta(eta)' now
           also work for '"logit"' link when 'is.integer(eta)'.

         * 'as.roman(x)' now should work platform independently, also
           for, e.g., 'x = "IIIII"' (= V) and 'x = "IIIIII"' (= VI).

         * 'R CMD Rd2pdf' works again on an installed package directory
           containing LaTeX help (from option '--latex'), thanks to a
           report by Peter Ruckdeschel.


To generate a diff of this commit:
cvs rdiff -u -r1.265 -r1.266 pkgsrc/math/R/Makefile
cvs rdiff -u -r1.110 -r1.111 pkgsrc/math/R/distinfo
cvs rdiff -u -r1.10 -r0 pkgsrc/math/R/patches/patch-configure.ac
cvs rdiff -u -r1.1 -r0 pkgsrc/math/R/patches/patch-src_include_R__ext_Error.h

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/math/R/Makefile
diff -u pkgsrc/math/R/Makefile:1.265 pkgsrc/math/R/Makefile:1.266
--- pkgsrc/math/R/Makefile:1.265        Tue Jan 21 15:09:05 2025
+++ pkgsrc/math/R/Makefile      Sun Mar  2 10:26:38 2025
@@ -1,11 +1,10 @@
-# $NetBSD: Makefile,v 1.265 2025/01/21 15:09:05 wiz Exp $
+# $NetBSD: Makefile,v 1.266 2025/03/02 10:26:38 mef Exp $
 
 #
 # If updating this package, please try to ensure PLIST.Darwin is kept in sync
 # to avoid unnecessarily breaking macOS users.
 #
-DISTNAME=      R-4.4.2
-PKGREVISION=   4
+DISTNAME=      R-4.4.3
 CATEGORIES=    math
 MASTER_SITES=  ${MASTER_SITE_R_CRAN:=base/R-4/}
 

Index: pkgsrc/math/R/distinfo
diff -u pkgsrc/math/R/distinfo:1.110 pkgsrc/math/R/distinfo:1.111
--- pkgsrc/math/R/distinfo:1.110        Mon Jan 20 21:26:02 2025
+++ pkgsrc/math/R/distinfo      Sun Mar  2 10:26:38 2025
@@ -1,12 +1,10 @@
-$NetBSD: distinfo,v 1.110 2025/01/20 21:26:02 he Exp $
+$NetBSD: distinfo,v 1.111 2025/03/02 10:26:38 mef Exp $
 
-BLAKE2s (R-4.4.2.tar.gz) = eb8c3d41ba6d0e12401f03410d2c8bb37dc3344989824c990f9a33f08ebb6c5c
-SHA512 (R-4.4.2.tar.gz) = b29d82242f70487f52849a5726610c03dffa4e54f1a32a9f3f76784fcf61f91d5c40cddee1029eeb9c9837ff26f382f348e8518dd68c84e9fc2192b981013d9a
-Size (R-4.4.2.tar.gz) = 37582785 bytes
-SHA1 (patch-configure.ac) = 7a62031864a9cef7b40278a7579293469fba7446
+BLAKE2s (R-4.4.3.tar.gz) = c7860018ef691608dfa505c2bbeb7e015d03d106e8590587b49d1eac63449cda
+SHA512 (R-4.4.3.tar.gz) = 2a1d1e5ee2e18c928e2b3e58df372083b4bbd0822863a8441404999209035436e236c8ffe3970827fbf3d765157365800ebb0bb46f361c6abe473ddec30be06f
+Size (R-4.4.3.tar.gz) = 40234425 bytes
 SHA1 (patch-m4_R.m4) = 3e1d390d8aa9895aee7cb479ddab371d82562b88
 SHA1 (patch-src_extra_xdr_xdr__mem.c) = 2e607b070db8b24a6ad5501e9c7c1549bf1b1d82
 SHA1 (patch-src_extra_xdr_xdr__stdio.c) = e4d8ace08ad282f44113941dd6a3b194769b8167
-SHA1 (patch-src_include_R__ext_Error.h) = bc55a8bba6bf931e3f6794577e63bfafdfc740cf
 SHA1 (patch-src_library_stats_src_Makefile.in) = 4eb93292858392792c37a706399e2cef91821bbe
 SHA1 (patch-src_main_character.c) = c1be2cae404ecbdd547343b70e9d072e9e1d5549