New master site, patch for portability check failure.

[Jason Bacon <jwbacon%tds.net@localhost>]

Module Name:	pkgsrc-wip
Committed By:	Jason Bacon <jwbacon%tds.net@localhost>
Pushed By:	outpaddling
Date:		Tue Sep 29 20:26:18 2015 -0500
Changeset:	372cb6602ab6037ebbd2ac532d4b5940aeb32e99

Modified Files:
	cufflinks/Makefile
	cufflinks/distinfo
	cufflinks/patches/patch-src_bundles.cpp

Log Message:
New master site, patch for portability check failure.

To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=372cb6602ab6037ebbd2ac532d4b5940aeb32e99

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

diffstat:
 cufflinks/Makefile                      | 2 +-
 cufflinks/distinfo                      | 3 ++-
 cufflinks/patches/patch-src_bundles.cpp | 2 +-
 3 files changed, 4 insertions(+), 3 deletions(-)

diffs:
diff --git a/cufflinks/Makefile b/cufflinks/Makefile
index 6b6a642..eeac0a3 100644
--- a/cufflinks/Makefile
+++ b/cufflinks/Makefile
@@ -19,7 +19,7 @@
 
 DISTNAME=	cufflinks-2.2.1
 CATEGORIES=	biology
-MASTER_SITES=	http://cufflinks.cbcb.umd.edu/downloads/
+MASTER_SITES=	http://cole-trapnell-lab.github.io/cufflinks/assets/downloads/
 
 MAINTAINER=	jwbacon%tds.net@localhost
 
diff --git a/cufflinks/distinfo b/cufflinks/distinfo
index b4da6a9..a48ab68 100644
--- a/cufflinks/distinfo
+++ b/cufflinks/distinfo
@@ -3,4 +3,5 @@ $NetBSD: distinfo,v 1.1 2014/09/04 21:51:02 outpaddling Exp $
 SHA1 (cufflinks-2.2.1.tar.gz) = 2b1b3a8f12cd2821ffc74ffbdd55cb329f37cbbb
 RMD160 (cufflinks-2.2.1.tar.gz) = 6378571ecb06971d1dff5b6ef81a55b36a8be498
 Size (cufflinks-2.2.1.tar.gz) = 766280 bytes
-SHA1 (patch-src_bundles.cpp) = 8fe8ed35fad1b5e8d41a837707c2f6702635ce8f
+SHA1 (patch-configure) = 24e592c47e814f5c355a2351752473507ed9fca5
+SHA1 (patch-src_bundles.cpp) = 4240e40a3f16223e868a421248972f057b3a74f4
diff --git a/cufflinks/patches/patch-src_bundles.cpp b/cufflinks/patches/patch-src_bundles.cpp
index 5e33c6b..a3bc281 100644
--- a/cufflinks/patches/patch-src_bundles.cpp
+++ b/cufflinks/patches/patch-src_bundles.cpp
@@ -1,6 +1,6 @@
 $NetBSD: patch-src_bundles.cpp,v 1.1 2014/09/04 21:51:02 outpaddling Exp $
 
---- src/bundles.cpp.orig	2014-05-29 14:45:27.000000000 +0000
+--- src/bundles.cpp.orig	2014-03-24 21:54:47.000000000 +0000
 +++ src/bundles.cpp
 @@ -698,7 +698,7 @@ double BundleFactory::next_valid_alignme
          if (!_hit_fac->get_hit_from_buf(hit_buf, tmp, false))