bwa: Imported in pkgsrc as biology/bwa

[Leonardo Taccari <leot%NetBSD.org@localhost>]

Module Name:	pkgsrc-wip
Committed By:	Leonardo Taccari <leot%NetBSD.org@localhost>
Pushed By:	leot
Date:		Wed Oct 14 20:30:33 2015 +0200
Changeset:	19f5eecfa21531e340a75158a155d8796138b484

Modified Files:
	Makefile
Removed Files:
	bwa/DESCR
	bwa/Makefile
	bwa/PLIST
	bwa/distinfo

Log Message:
bwa: Imported in pkgsrc as biology/bwa

To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=19f5eecfa21531e340a75158a155d8796138b484

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

diffstat:
 Makefile     |  1 -
 bwa/DESCR    |  2 --
 bwa/Makefile | 28 ----------------------------
 bwa/PLIST    |  5 -----
 bwa/distinfo |  5 -----
 5 files changed, 41 deletions(-)

diffs:
diff --git a/Makefile b/Makefile
index e9b238e..888d0f1 100644
--- a/Makefile
+++ b/Makefile
@@ -251,7 +251,6 @@ SUBDIR+=	bub-n-bros
 SUBDIR+=	bunny
 SUBDIR+=	bup-git
 SUBDIR+=	busybox
-SUBDIR+=	bwa
 SUBDIR+=	bwm-ng
 SUBDIR+=	c-news
 SUBDIR+=	c2hs
diff --git a/bwa/DESCR b/bwa/DESCR
deleted file mode 100644
index 1a8e65b..0000000
--- a/bwa/DESCR
+++ /dev/null
@@ -1,2 +0,0 @@
-BWA is a software package for mapping low-divergent sequences against a large
-reference genome, such as the human genome.
diff --git a/bwa/Makefile b/bwa/Makefile
deleted file mode 100644
index 983c23c..0000000
--- a/bwa/Makefile
+++ /dev/null
@@ -1,28 +0,0 @@
-# $NetBSD: Makefile,v 1.3 2015/09/16 16:10:01 outpaddling Exp $
-#
-###########################################################
-#               Generated by fbsd2pkg                     #
-###########################################################
-
-DISTNAME=	bwa-0.7.9a
-CATEGORIES=	biology
-MASTER_SITES=	${MASTER_SITE_SOURCEFORGE:=bio-bwa/}
-EXTRACT_SUFX=	.tar.bz2
-
-MAINTAINER=	jwbacon%tds.net@localhost
-HOMEPAGE=	http://bio-bwa.sourceforge.net/
-COMMENT=	Map low-divergent sequences against a large reference genome
-LICENSE=	gnu-gpl-v3
-
-USE_TOOLS+=	perl:run gmake
-REPLACE_PERL=	*.pl
-
-INSTALLATION_DIRS=	bin ${PKGMANDIR}/man1
-
-do-install:
-	${INSTALL_PROGRAM} ${WRKSRC}/bwa ${DESTDIR}${PREFIX}/bin
-	${INSTALL_SCRIPT} ${WRKSRC}/*.pl ${DESTDIR}${PREFIX}/bin
-	${INSTALL_MAN} ${WRKSRC}/*.1 ${DESTDIR}${PREFIX}/${PKGMANDIR}/man1
-
-.include "../../devel/zlib/buildlink3.mk"
-.include "../../mk/bsd.pkg.mk"
diff --git a/bwa/PLIST b/bwa/PLIST
deleted file mode 100644
index 7ca6578..0000000
--- a/bwa/PLIST
+++ /dev/null
@@ -1,5 +0,0 @@
-@comment $NetBSD$
-bin/bwa
-bin/qualfa2fq.pl
-bin/xa2multi.pl
-man/man1/bwa.1
diff --git a/bwa/distinfo b/bwa/distinfo
deleted file mode 100644
index 950771b..0000000
--- a/bwa/distinfo
+++ /dev/null
@@ -1,5 +0,0 @@
-$NetBSD$
-
-SHA1 (bwa-0.7.9a.tar.bz2) = a77ce327e8acba554b1d27bfdd1c148f79726484
-RMD160 (bwa-0.7.9a.tar.bz2) = a51b7c686a206144eab2aee0a372d5ae46fcfce1
-Size (bwa-0.7.9a.tar.bz2) = 166193 bytes