pkgsrc-WIP-changes by thread

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• antlr: Clean up, Jason Bacon
• py-rdfextras: Clean up, Jason Bacon
• py-rdflib340: Clean up, Jason Bacon
• sparqlwrapper: Remove bl3, Jason Bacon
• py-sparqlwrapper: Clean up, Jason Bacon
  • <Possible follow-ups>
  • py-sparqlwrapper: Clean up, Jason Bacon
• py-pypeflow: Clean up, Jason Bacon
• (pkgtools/git-update) updated to 0.9.5, correction, Makoto Fujiwara (CF-S9)
  • (pkgtools/check-update) Re: (pkgtools/git-update), Makoto Fujiwara
• Add bpcscripts: Gast Illumina processing, Jason Bacon
• Makefile: Fix pkg name fasthack -> fastahack, Jason Bacon
• Add fastaunique: Sort and uniq fasta files, Jason Bacon
• samtools0119: Fix path in bl3, Jason Bacon
• (pkgtools/check-update) Do not set executable for , Makoto Fujiwara (CF-S9)
• 'Add ddocent: Bash pipeline for ddRAD sequencing', Jason Bacon
• samtools0119: Sync to newer revision from privat, Jason Bacon
• 'Add freebayes: Bayesian haplotype-based polymorp, Jason Bacon
• 'Add vcflib: C++ library and CLI tools for parsin, Jason Bacon
• 'Add fsom: Tiny C library for managing SOM (Self-, Jason Bacon
• 'Add fastahack: Utilities for indexing and sequen, Jason Bacon
• 'Add smithwaterman: Smith-waterman-gotoh alignmen, Jason Bacon
• 'Add multichoose: Generate multiset combinations , Jason Bacon
• 'Add intervaltree: Minimal C++ interval tree impl, Jason Bacon
• 'Add tabixpp: C++ wrapper to tabix indexer', Jason Bacon
• starfighter: needs pkg-config, Yorick Hardy
• fs2open: fix libtool usage, Yorick Hardy
• xoreos: needs libtool, Yorick Hardy
• clang-netbsd: Update to SVN 299109, Kamil Rytarowski
• llvm-netbsd: Update to SVN 299109, Kamil Rytarowski
• lldb-netbsd: Adapt local changes to upstream rev, Kamil Rytarowski
• lldb-netbsd: Drop merged patch upstream, Kamil Rytarowski
• 'Add microbiomeutil: Utilities for processing and, Jason Bacon
• 'Add cdbfasta: Fast indexing and retrieval of fas, Jason Bacon
• 'Add py-pbfalcon: Experimental PacBio diploid ass, Jason Bacon
• 'Add py-rdfextras: ', Jason Bacon
• 'Add py-rdflib340: Python library for RDF manipul, Jason Bacon
• 'Add py-isodate: ISO 8601 date/time/duration pars, Jason Bacon
• 'Add py-sparqlwrapper: SPARQL endpoint interface , Jason Bacon
• 'Add py-pypeflow: Lightweight and reusable make/f, Jason Bacon
• 'Add daligner: Find all significant local alignme, Jason Bacon
• 'Add dazz_db: Dresden assembler for long read DNA, Jason Bacon
• 'Add vcglib: Template library for manipulation of, Jason Bacon
• (pkgtools/check-update/Makefile) Adjusting blank l, Makoto Fujiwara (CF-S9)
• (pkgtools/check-update) w3m is necessay in fork-w3, Makoto Fujiwara (CF-S9)
• (pkgtools/check-update) Update to 0.9.4, make chec, Makoto Fujiwara (CF-S9)
• (pkgtools/check-update/INSTALL) Adjust make direct, Makoto Fujiwara (CF-S9)
• fbsd2pkg: Upgrade to 0.5, Jason Bacon
• (pkgtools/check-update) Add New file INSTALL, Makoto Fujiwara (CF-N9)
• 'Add vsearch: Versatile open-source tool for meta, Jason Bacon
• Update Freeswitch v1.6.5, Kethzer Docteur
• lldb-git: Remove GIT_REVISION.lldb, Kamil Rytarowski
• lldb-netbsd: Recognize NetBSD specific libdebug , Kamil Rytarowski
• (TODO) Add failing pattern if htdocs does not exis, Makoto Fujiwara (CF-S9)
• lldb-netbsd: clang-format over elf-core plugin, Kamil Rytarowski
• lldb-netbsd: clang-format -i *.cpp *.h, Kamil Rytarowski
• lldb-netbsd: Don't pretend to support minidump a, Kamil Rytarowski
• lldb-netbsd: Drop local patch-source_CMakeLists., Kamil Rytarowski
• lldb-netbsd: Drop local patch, Kamil Rytarowski
• lldb-netbsd: Fix build after rebase, Kamil Rytarowski
• lldb-netbsd: Resurrect PT_STEP, TRAP_TRACE, TRAP, Kamil Rytarowski
• lldb-netbsd: Upgrade to SVN 298953, Kamil Rytarowski
• llvm-netbsd: Upgrade to SVN 298953, Kamil Rytarowski
• llvm-clang: Upgrade to SVN 298953, Kamil Rytarowski
• lldb-git: Apply patches from upstream review, Kamil Rytarowski
• py-dicom: Fix download-during-build issue, Jason Bacon
• (pkgtools/check-update) Udated to 0.9.3. Adjust pa, Makoto Fujiwara (CF-N9)
• (check-update) updated to 0.9.2, (cd ${VARBASE}/ch, Makoto Fujiwara (CF-N9)
• Import py-lru-dict-1.1.6 as wip/py-lru-dict, Min Sik Kim
• Update py-logbook to 1.0.0, Min Sik Kim
• toxcore-git: Patch incorrect use of test, Mateusz Poszwa
• Update py-bcolz to 0.12.1, Min Sik Kim
• lldb-netbsd: Catch up after OpenBSD and support , Kamil Rytarowski
• clang-netbsd: Upgrade to 298810 and sync PLIST, Kamil Rytarowski
  • <Possible follow-ups>
  • clang-netbsd: Upgrade to 298810 and sync PLIST, Kamil Rytarowski
• llvm-netbsd: Upgrade to 298810, Kamil Rytarowski
• vis-editor: fix build on linux, Eric Garver
• vis-editor: Update to version 0.3, Eric Garver
• (print/tex-ptex) Do not install platex ( do not li, Makoto Fujiwara (CF-S9)
• (print/tex-ptex) reverting, remove interim fix. Up, Makoto Fujiwara (CF-S9)
• (print/tex-ptex) reverting, remove interim fix, Makoto Fujiwara (CF-S9)
• (pkgtools/check-update) New package, Makoto Fujiwara (CF-S9)
• lldb-git: Small cleanup before sending for review, Kamil Rytarowski
• xrdp: add CVE-2017-6967 to possible vulnerabilit, Leonardo Taccari
• firebird: add CVE-2017-6369 CVE to TODO, Leonardo Taccari
• glibc: add CVE-2015-8983, CVE-2015-8984 too, Leonardo Taccari
• glibc: add CVE-2015-8985 to the list of vulnerab, Leonardo Taccari
• Add tex-platex{,-doc} packages, Mark Davies
• TODO: + translate-shell-0.9.6.1., Thomas Klausner
• lldb-git: Minor tweaks around qmemoryregion, Kamil Rytarowski
• lldb-netbsd: Add code for Attach and Launch, Kamil Rytarowski
• lldb-git: Introduce NativeRegisterContextNetBSD_, Kamil Rytarowski
• lldb-git: work-in-progress to extract sole break, Kamil Rytarowski
• (print/tex-ptex) Add update to fix broken at pkgs, Makoto Fujiwara (CF-S9)
• lldb-netbsd: Add PtraceWrapper() and stub for Mo, Kamil Rytarowski
• lldb-git: Eliminate local patches - merged upstr, Kamil Rytarowski
• mplayer*: remove references to removed realplayer-, Thomas Klausner
• Update py-alembic to 0.9.1, Min Sik Kim
• Update py-toolz to 0.8.2, Min Sik Kim
• Import py-editor-1.0.3 as wip/py-editor, Min Sik Kim
• xf86-video-ati-dfbsd: Import xf86-video-ati-7.9., David Shao
• lldb-netbsd: Resurrect lldb to a functional stage, Kamil Rytarowski
• tex-attachfile-doc: import tex-attachfile-doc-1.9, Yorick Hardy
• tex-cutwin-doc: use CTAN for downloads, Yorick Hardy
• update to 0.41.2, Susumu Miwa
• eventd: Bump to 0.21.0, Quentin Glidic
• Update py-scikit-learn to 0.18.1, Min Sik Kim
• PicoLisp: Rename to picolisp, Mateusz Poszwa
• fix pkglint errors, Matthew Sporleder
• new package, lisp flavoured erlang, Matthew Sporleder
• picolisp: Amend DIST_SUBDIR and regenerate disti, Mateusz Poszwa
• picolisp: Add DIST_SUBDIR (thanks wiz), Mateusz Poszwa
• lldb-netbsd: Rebase patches to SVN r.298524, Kamil Rytarowski
• solvespace-git: Drop a patch merged upstream, Mateusz Poszwa
• lldb-netbsd: Update TODO with reality, Kamil Rytarowski
• llvm-netbsd: clang-netbsd: lldb-netbsd: Update t, Kamil Rytarowski
• clang-netbsd: Upgrade to SVN r.298513 and sync P, Kamil Rytarowski
• llvm-netbsd: Update to SVN r. 298513 and sync PL, Kamil Rytarowski
• lldb-git: Set this package temporarily to stable, Kamil Rytarowski
• TODO: + uget-2.1.5., Thomas Klausner
• lldb-git: Reuse NativeProcessPlugin Launch and A, Kamil Rytarowski
• modular-xorg-server-dfbsd: Update wip/modular-xo, David Shao
• lldb-netbsd: Fix linking issues, Kamil Rytarowski
• MesaLib-dfbsd: Update wip/MesaLib-dfbsd to 17.0., David Shao
• lldb-netbsd: Fix compilation stage issues, Kamil Rytarowski
• lldb-netbsd: Fix some bugs and restore most of t, Kamil Rytarowski
• lldb-netbsd: Rebase NativeRegisterNetBSD to SVN , Kamil Rytarowski
• lldb-netbsd: Rebase NativeThreadNetBSD to SVN tr, Kamil Rytarowski
• lldb-netbsd: Rebase NativeProcessNetBSD to SVN t, Kamil Rytarowski
• pkg_summary-utils: update PLIST according to lat, Aleksey Cheusov
• lldb-netbsd: Dummy rebase of local patches for n, Kamil Rytarowski
• clang-netbsd: Sync PLIST with upstream, Kamil Rytarowski
• libquvi-scripts: Import libquvi-scripts-0.9.2013, Mateusz Poszwa
• quvi: Import quvi-0.9.5 as wip/quvi, Mateusz Poszwa
• libquvi: Import libquvi-0.9.4 as wip/libquvi, Mateusz Poszwa
• llvm-netbsd: clang-netbsd: lldb-netbsd: Update t, Kamil Rytarowski
• lldb-git: Eliminate local patches, Kamil Rytarowski
  • <Possible follow-ups>
  • lldb-git: Eliminate local patches, Kamil Rytarowski
• PicoLisp64: Update to 17.3.21, Mateusz Poszwa
• lldb-git: Trim unused code for now, Kamil Rytarowski
• track the unstable HEAD tgz, we should probably sw, Matthew Sporleder
• Dropped support for LDAP, Alberto Mijares
• ledger: remove, imported to pkgsrc/finance/ledge, Thomas Klausner
• Working package on CentOS 7, Alberto Mijares
• rspamd15: remove, used for updating mail/rspamd., Thomas Klausner
• lld-git: Sync PLIST with recent snapshot, Kamil Rytarowski
• Add py-pyscard, Jonathan Schleifer
• lldb-git: Prepare Native Process NetBSD stub for, Kamil Rytarowski
• Makefile: sort, Thomas Klausner
• lldb-netbsd: Upgrade to r.298111, Kamil Rytarowski
• lldb-netbsd: Catch up after upstream changes (af, Kamil Rytarowski
• TODO: + py-sh-1.12.11, py-xpra-2.0., Thomas Klausner
• Initial import of rspamd 1.5., Bartosz Kuzma
• Use varnish user/group in SMF with proper privileg, Filip Hajny
• busybox: add CVE-2014-9645 in TODO, Leonardo Taccari
• Delete py-traitlets, Min Sik Kim
• Sync SMF change to varnish4 too, Filip Hajny
• Update varnish to 5.1.1., Filip Hajny
• - Fix PKG_SYSCONFDIR handling. - Fix SMF varnishd , Filip Hajny
• clang-netbsd: Update to r. 298111 and sync PLIST, Kamil Rytarowski
• llvm-netbsd: Update to r.298111 and sync PLIST, Kamil Rytarowski
• Adding asterisk11-vicidial package (modified aster, Alberto Mijares
• Use tabs for indentation and delete redundant line, Min Sik Kim
• (devel/bugzilla) Update 5.0.3 to 5.1.1 (unstable d, Makoto Fujiwara (CF-N10)
• +py-eemeter, K.I.A.Derouiche
• new package: py-thermostat, K.I.A.Derouiche
• +py-teradata, K.I.A.Derouiche
• PicoLisp: Update PicoLisp and PicoLisp64 to 17.3, Mateusz Poszwa
• PicoLisp64: Pass the tests (thanks Mike Pechkin , Mateusz Poszwa
• - initial checkin of pidgin plugin for Facebook me, Izaac
• glibc: note CVE-2015-8982 in TODO, Leonardo Taccari
• linux-kernel: note CVE-2017-6874 in TODO, Leonardo Taccari
• jakarta-struts: note CVE-2017-5638 in the TODO, Leonardo Taccari
• lldb-netbsd: Fixes in the breakpoint session, Kamil Rytarowski
• Fix build with GCC on (some) 32bit platforms, Filip Hajny
• Added snort, Nils Ratusznik
• Import snort-2.9.9.0 as wip/snort, in order to upd, Nils Ratusznik
• Do not mess with the VCC_CC var, fixes at least Su, Filip Hajny
• mackerel-agent: import mackerel-agent-0.40.0 wip, Susumu Miwa
• py-xpra: update to 1.0.4., Thomas Klausner
• new package mackerel-agent, Susumu Miwa
• Initial port of delve, a Go debugger., Benny Siegert
• +delve, Benny Siegert
• Dust off the wip/varnish* packages and bring them , Filip Hajny
• lldb-netbsd: Read process virtual memory mapping, Kamil Rytarowski
• translate-toolkit: add py-sqlite3 as a dep., i3enedek
• freevrrpd: Fix PREFIX, VARBASE, PKG_SYSCONFDIR p, Hauke Fath
• freevrrpd: Add ABOUTCISCOPATENT file for documen, Hauke Fath
• freevrrpd: More cleanup Also, conditionalize li, Hauke Fath
• freevrrpd: This package uses pthreads., Hauke Fath
• freevrrpd: Make the package build and pkglint(8), Hauke Fath
• update mtr-current to 0.87.225, yvs
• update mtr-graph to 0.85.54 (git:8506092), yvs
• libpthread-subts: update to 0.4., Thomas Klausner
• emacs-git: sync PLIST with upstream, Thomas Klausner
• lldb-netbsd: Add missing break;s in MonitorCallb, Kamil Rytarowski
• translate-toolkit: fix typo, fiddle with default, i3enedek
• tex-cutwin: import tex-cutwin-0.1 and tex-cutwin, Yorick Hardy
• leveldb: remove, imported to pkgsrc/databases/le, Thomas Klausner
• tex-hanging: import tex-hanging-1.2b and tex-han, Yorick Hardy
• tex-leading: import tex-leading-0.3 and tex-lead, Yorick Hardy