Novel algorithm for identifying transcript factor binding sites

[Jason Bacon <bacon4000%gmail.com@localhost>]

Module Name:	pkgsrc-wip
Committed By:	Jason Bacon <bacon4000%gmail.com@localhost>
Pushed By:	outpaddling
Date:		Thu Nov 2 10:29:13 2017 -0500
Changeset:	8df15b7bc3741c033acaad92b0a791d4dbf81b2b

Modified Files:
	Makefile
Added Files:
	py-macs2/DESCR
	py-macs2/Makefile
	py-macs2/PLIST
	py-macs2/distinfo

Log Message:
Novel algorithm for identifying transcript factor binding sites

To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=8df15b7bc3741c033acaad92b0a791d4dbf81b2b

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

diffstat:
 Makefile          |  1 +
 py-macs2/DESCR    |  1 +
 py-macs2/Makefile | 50 ++++++++++++++++++++++++++++++++++++++++++++++++++
 py-macs2/PLIST    |  1 +
 py-macs2/distinfo |  6 ++++++
 5 files changed, 59 insertions(+)

diffs:
diff --git a/Makefile b/Makefile
index 77324502a1..e5f601ed66 100644
--- a/Makefile
+++ b/Makefile
@@ -3280,6 +3280,7 @@ SUBDIR+=	py-lsqfit
 SUBDIR+=	py-luminous
 SUBDIR+=	py-lxmlproc
 SUBDIR+=	py-lzma
+SUBDIR+=	py-macs2
 SUBDIR+=	py-m2ext
 SUBDIR+=	py-macaroons
 SUBDIR+=	py-magnitude
diff --git a/py-macs2/DESCR b/py-macs2/DESCR
new file mode 100644
index 0000000000..845dbab1b0
--- /dev/null
+++ b/py-macs2/DESCR
@@ -0,0 +1 @@
+[description of the port]
diff --git a/py-macs2/Makefile b/py-macs2/Makefile
new file mode 100644
index 0000000000..8e94779d93
--- /dev/null
+++ b/py-macs2/Makefile
@@ -0,0 +1,50 @@
+# $NetBSD$
+#
+###########################################################
+#                  Generated by fbsd2pkg                  #
+#              Thu Nov  2 10:04:18 CDT 2017               #
+###########################################################
+
+###########################################################
+# Unconverted and partially converted FreeBSD port syntax:
+
+#post-install:
+#	${STRIP} \
+#		${DESTDIR}${PYTHON_SITELIBDIR}/MACS2/*.so \
+#		${DESTDIR}${PYTHON_SITELIBDIR}/MACS2/*/*.so
+
+DISTNAME=	macs2-${PORTVERSION}
+PKGNAME=	${PYPKGPREFIX}-macs2-${PORTVERSION}
+CATEGORIES=	wip
+MASTER_SITES=	${MASTER_SITE_GITHUB:=taoliu/}
+GITHUB_PROJECT=	MACS
+GITHUB_TAG=	6946b2f6571cd0a7cfbb882c79aaa25a05a5c48d
+
+MAINTAINER=	bacon4000%uwm.edu@localhost
+HOMEPAGE=	https://pypi.python.org/pypi/macs2
+COMMENT=	Novel algorithm for identifying transcript factor binding sites
+# Check this
+LICENSE=	modified-bsd
+
+# Test and change if necessary.
+# MAKE_JOBS_SAFE=	no
+
+# Just assuming C and C++: Adjust this!
+USE_LANGUAGES=	c c++
+PYDISTUTILSPKG=	yes
+
+PORTVERSION=	2017.05.05
+
+post-patch:
+	${MV} -f ${WRKSRC}/setup_w_cython.py ${WRKSRC}/setup.py
+
+# Verify that we shouldn't use egg.mk or extensions.mk instead.
+.include "../../lang/python/distutils.mk"
+.include "../../math/py-numpy/buildlink3.mk"
+.include "../../math/blas/buildlink3.mk"
+.include "../../devel/py-cython/buildlink3.mk"
+# Based on USES=python.  Check this.
+.include "../../lang/python/application.mk"
+# Linux doesn't have zlib in the base, so just in case...
+# .include "../../devel/zlib/buildlink3.mk"
+.include "../../mk/bsd.pkg.mk"
diff --git a/py-macs2/PLIST b/py-macs2/PLIST
new file mode 100644
index 0000000000..48d96a5493
--- /dev/null
+++ b/py-macs2/PLIST
@@ -0,0 +1 @@
+@comment $NetBSD$
diff --git a/py-macs2/distinfo b/py-macs2/distinfo
new file mode 100644
index 0000000000..6b6e5dfadf
--- /dev/null
+++ b/py-macs2/distinfo
@@ -0,0 +1,6 @@
+$NetBSD$
+
+SHA1 (macs2-2017.05.05-6946b2f6571cd0a7cfbb882c79aaa25a05a5c48d.tar.gz) = d1ac084d73c1aa33e7f98518fe27348560fc3982
+RMD160 (macs2-2017.05.05-6946b2f6571cd0a7cfbb882c79aaa25a05a5c48d.tar.gz) = 64cd608e2ba4c9c7817b3164aa9b2477e434803a
+SHA512 (macs2-2017.05.05-6946b2f6571cd0a7cfbb882c79aaa25a05a5c48d.tar.gz) = 8b63dea2a0e1d00c5217760a30346df9c537e4d9a051ec8a3cc0f5c0a299bc9480b17ad0d8f871774c3ae1bc4c714fea1b0d5e07fb05e6c43a3d5c3992ebb432
+Size (macs2-2017.05.05-6946b2f6571cd0a7cfbb882c79aaa25a05a5c48d.tar.gz) = 159560976 bytes