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p5-trimgalore: Clean up
Module Name: pkgsrc-wip
Committed By: Jason Bacon <bacon4000%gmail.com@localhost>
Pushed By: outpaddling
Date: Fri Nov 3 16:45:20 2017 -0500
Changeset: 5e253b38f60c275161093a4906a90e552086ba4a
Modified Files:
p5-trimgalore/Makefile
Log Message:
p5-trimgalore: Clean up
To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=5e253b38f60c275161093a4906a90e552086ba4a
Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.
diffstat:
p5-trimgalore/Makefile | 15 +++------------
1 file changed, 3 insertions(+), 12 deletions(-)
diffs:
diff --git a/p5-trimgalore/Makefile b/p5-trimgalore/Makefile
index c5fc4546c8..69f6baac07 100644
--- a/p5-trimgalore/Makefile
+++ b/p5-trimgalore/Makefile
@@ -5,20 +5,9 @@
# Thu Nov 2 15:12:06 CDT 2017 #
###########################################################
-###########################################################
-# Unconverted and partially converted FreeBSD port syntax:
-
-#LICENSE_FILE= ${WRKSRC}/LICENSE
-# Do we really need p5-IPC-Open3-Simple or is IPC:Open3 part of core?
-# RUN_DEPENDS= p5-IPC-Open3-Simple>=0:devel/p5-IPC-Open3-Simple \
-# p5-File-Spec-Native>=0:devel/p5-File-Spec-Native \
-# p5-File-BaseDir>=0:devel/p5-File-BaseDir \
-# p5-Cwd-Guard>=0:devel/p5-Cwd-Guard \
-# fastqc>0:wip/fastqc
-
DISTNAME= trimgalore-${PORTVERSION}
PKGNAME= p5-trimgalore-${PORTVERSION}
-CATEGORIES= wip
+CATEGORIES= biology
MASTER_SITES= ${MASTER_SITE_GITHUB:=FelixKrueger/}
GITHUB_PROJECT= trimgalore
GITHUB_TAG= ${PORTVERSION}
@@ -28,6 +17,8 @@ HOMEPAGE= https://github.com/FelixKrueger/TrimGalore
COMMENT= Wrapper around Cutadapt and FastQC for adapter and quality trimming
LICENSE= gnu-gpl-v3
+DEPENDS+= fastqc>0:../../wip/fastqc
+
USE_TOOLS+= perl:run pax
REPLACE_PERL= trim_galore
NO_BUILD= yes
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