pear-merger: Memory-efficient and highly accurate pair-end read merger

[root <root%centosdev.ceas.uwm.edu@localhost>]

Module Name:	pkgsrc-wip
Committed By:	root <root%centosdev.ceas.uwm.edu@localhost>
Pushed By:	outpaddling
Date:		Thu Mar 22 18:22:57 2018 -0500
Changeset:	b384575454b0ae711958c1e44146e911a9939894

Modified Files:
	Makefile
Added Files:
	pear-merger/DESCR
	pear-merger/Makefile
	pear-merger/PLIST
	pear-merger/distinfo

Log Message:
pear-merger: Memory-efficient and highly accurate pair-end read merger

To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=b384575454b0ae711958c1e44146e911a9939894

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

diffstat:
 Makefile             |  1 +
 pear-merger/DESCR    |  3 +++
 pear-merger/Makefile | 28 ++++++++++++++++++++++++++++
 pear-merger/PLIST    |  3 +++
 pear-merger/distinfo |  6 ++++++
 5 files changed, 41 insertions(+)

diffs:
diff --git a/Makefile b/Makefile
index b86a4c9b36..37ac108790 100644
--- a/Makefile
+++ b/Makefile
@@ -2704,6 +2704,7 @@ SUBDIR+=	pear-channel-swiftmailer
 SUBDIR+=	pear-channel-symfony
 SUBDIR+=	pear-channel-theseer
 SUBDIR+=	pear-fDOMDocument
+SUBDIR+=	pear-merger
 SUBDIR+=	pear-phpcpd
 SUBDIR+=	pear-phpdcd
 SUBDIR+=	pear-phploc
diff --git a/pear-merger/DESCR b/pear-merger/DESCR
new file mode 100644
index 0000000000..df36aa3066
--- /dev/null
+++ b/pear-merger/DESCR
@@ -0,0 +1,3 @@
+PEAR is an ultrafast, memory-efficient and highly accurate pair-end read
+merger. It is fully parallelized and can run with as low as just a few
+kilobytes of memory.
diff --git a/pear-merger/Makefile b/pear-merger/Makefile
new file mode 100644
index 0000000000..76bce792c6
--- /dev/null
+++ b/pear-merger/Makefile
@@ -0,0 +1,28 @@
+# $NetBSD$
+
+DISTNAME=	pear_${PORTVERSION}_src_all
+PKGNAME=	pear-merger-${PORTVERSION}
+CATEGORIES=	biology
+MASTER_SITES=	https://depot.galaxyproject.org/software/pear/
+
+MAINTAINER=	weinertw%uwm.edu@localhost
+HOMEPAGE=	http://sco.h-its.org/exelixis/web/software/pear/
+COMMENT=	Memory-efficient and highly accurate pair-end read merger
+LICENSE=	cc-by-sa-v3.0
+
+USE_LANGUAGES=	c c++
+GNU_CONFIGURE=	yes
+
+WRKSRC=		${WRKDIR}/pear-${PORTVERSION}-src
+
+PORTVERSION=	0.9.6
+
+INSTALLATION_DIRS=	bin ${PKGMANDIR}/man1
+
+do-install:
+	${INSTALL_PROGRAM} ${WRKSRC}/src/pear ${DESTDIR}${PREFIX}/bin/pearRM
+	${INSTALL_MAN} ${WRKSRC}/man/pear.1 ${DESTDIR}${PREFIX}/${PKGMANDIR}/man1/pearRM.1
+
+.include "../../archivers/bzip2/buildlink3.mk"
+.include "../../devel/zlib/buildlink3.mk"
+.include "../../mk/bsd.pkg.mk"
diff --git a/pear-merger/PLIST b/pear-merger/PLIST
new file mode 100644
index 0000000000..e56c9e3f4c
--- /dev/null
+++ b/pear-merger/PLIST
@@ -0,0 +1,3 @@
+@comment $NetBSD$
+bin/pearRM
+man/man1/pearRM.1
diff --git a/pear-merger/distinfo b/pear-merger/distinfo
new file mode 100644
index 0000000000..8cf952a873
--- /dev/null
+++ b/pear-merger/distinfo
@@ -0,0 +1,6 @@
+$NetBSD$
+
+SHA1 (pear_0.9.6_src_all.tar.gz) = 351bde183653facb9c6a4e0b7a4328a130c3b903
+RMD160 (pear_0.9.6_src_all.tar.gz) = 2b90f628135a9b9610eb48f7e8816dbf49092c38
+SHA512 (pear_0.9.6_src_all.tar.gz) = 8761426d0bb6c2b7aedde3e78858aa22e3a4fca65fa1f4712b6165497707228af60c2048eca94c9728fabf17b70748f32c08f39f832ffa36e9ab913290b73f87
+Size (pear_0.9.6_src_all.tar.gz) = 292790 bytes