ncbi-blast+: Fix perms on installed files

[Jason W Bacon <bacon%NetBSD.org@localhost>]

Module Name:	pkgsrc-wip
Committed By:	Jason W Bacon <bacon%NetBSD.org@localhost>
Pushed By:	outpaddling
Date:		Tue Mar 27 12:30:22 2018 -0500
Changeset:	0dcee4e818a55ff8d3af0fd7049ddf9b22a5a951

Modified Files:
	ncbi-blast+/distinfo
	ncbi-blast+/patches/patch-src_build-system_Makefile.in.top

Log Message:
ncbi-blast+: Fix perms on installed files

To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=0dcee4e818a55ff8d3af0fd7049ddf9b22a5a951

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

diffstat:
 ncbi-blast+/distinfo                                       |  2 +-
 ncbi-blast+/patches/patch-src_build-system_Makefile.in.top | 13 +++++++++----
 2 files changed, 10 insertions(+), 5 deletions(-)

diffs:
diff --git a/ncbi-blast+/distinfo b/ncbi-blast+/distinfo
index 02f06d077b..92229cd1d8 100644
--- a/ncbi-blast+/distinfo
+++ b/ncbi-blast+/distinfo
@@ -6,6 +6,6 @@ SHA512 (ncbi-blast-2.7.1+-src.tar.gz) = e4b3914f51165ae4c82051068ed9d3470687a4e0
 Size (ncbi-blast-2.7.1+-src.tar.gz) = 23254824 bytes
 SHA1 (patch-compilers_xcode30__prj_configure) = d6bf60c1a12ef1ddd93af1bce87543a1d5156bea
 SHA1 (patch-src_algo_blast_core_blast__kappa.c) = 0d0492bbb93d9ac48a9456bb5762c923ae84ffb9
-SHA1 (patch-src_build-system_Makefile.in.top) = 6e263f9eb1ba2a1b00a76ca0201e608531826d7b
+SHA1 (patch-src_build-system_Makefile.in.top) = 71d5246867a8c985c1175c338fb0af664094ca01
 SHA1 (patch-src_build-system_cmake_cmake-configure) = e120568c934342c8003f89470d78b28f87ae48c4
 SHA1 (patch-src_build-system_configure) = cd2cffb73da34806c189f871799960f78a1a5a4d
diff --git a/ncbi-blast+/patches/patch-src_build-system_Makefile.in.top b/ncbi-blast+/patches/patch-src_build-system_Makefile.in.top
index 54f8202361..cfc7e09738 100644
--- a/ncbi-blast+/patches/patch-src_build-system_Makefile.in.top
+++ b/ncbi-blast+/patches/patch-src_build-system_Makefile.in.top
@@ -1,10 +1,10 @@
 $NetBSD$
 
-# Add destdir support
+# Add destdir suppot and fix perms on installed files
 
---- src/build-system/Makefile.in.top.orig	2018-03-27 13:10:52.497034627 +0000
+--- src/build-system/Makefile.in.top.orig	2017-02-01 16:52:02.000000000 +0000
 +++ src/build-system/Makefile.in.top
-@@ -37,21 +37,21 @@ check: $(PROJECTS)
+@@ -37,22 +37,26 @@ check: $(PROJECTS)
  	fi
  
  install-toolkit:
@@ -14,7 +14,7 @@ $NetBSD$
 -	$(INSTALL) -m 644 $(llibdir)/*.* $(libdir)
 +	-$(RMDIR) $(DESTDIR)$(pincludedir)
 +	$(INSTALL) -d $(DESTDIR)$(bindir) $(DESTDIR)$(libdir) $(DESTDIR)$(pincludedir)
-+	$(INSTALL) $(lbindir)/* $(DESTDIR)$(bindir)
++	$(INSTALL) -m 755 $(lbindir)/* $(DESTDIR)$(bindir)
 +	$(INSTALL) -m 644 $(llibdir)/*.* $(DESTDIR)$(libdir)
  	if test -d $(llibdir)/ncbi; then \
 -	    cp -pPR $(llibdir)/ncbi $(libdir)/; \
@@ -27,10 +27,15 @@ $NetBSD$
  	    for x in *.a; do \
  	        $(LN_S) "$$x" "`$(BASENAME) \"$$x\" .a`-static.a"; \
  	    done
++	find $(DESTDIR)$(libdir) -name '*.a' -exec chmod 644 '{}' \;
++	find $(DESTDIR)$(libdir) -name '*.so*' -exec chmod 755 '{}' \;
  	for d in $(includedir0) $(incdir); do \
  	    cd $$d && find * -name .svn -prune -o -print | \
 -                cpio -pd $(pincludedir) ; \
 +                cpio -pd $(DESTDIR)$(pincludedir) ; \
  	done
++	find $(DESTDIR)$(pincludedir) -type f -exec chmod 644 '{}' \;
++	find $(DESTDIR)$(pincludedir) -type d -exec chmod 755 '{}' \;
  ## set up appropriate build and status directories somewhere under $(libdir)?
  
+ install-gbench: