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plink2: Update to latest commit
Module Name: pkgsrc-wip
Committed By: Jason Bacon <bacon%NetBSD.org@localhost>
Pushed By: outpaddling
Date: Sun May 13 10:53:41 2018 -0500
Changeset: e37627789a8a05973fa89a8828101df95c5c48b4
Modified Files:
plink2/Makefile
plink2/distinfo
plink2/patches/patch-Makefile
Log Message:
plink2: Update to latest commit
To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=e37627789a8a05973fa89a8828101df95c5c48b4
Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.
diffstat:
plink2/Makefile | 4 ++--
plink2/distinfo | 10 +++++-----
plink2/patches/patch-Makefile | 13 +++++++------
3 files changed, 14 insertions(+), 13 deletions(-)
diffs:
diff --git a/plink2/Makefile b/plink2/Makefile
index ee561d6f48..6c9dfeb550 100644
--- a/plink2/Makefile
+++ b/plink2/Makefile
@@ -9,7 +9,7 @@ DISTNAME= plink-ng-${PORTVERSION}
CATEGORIES= biology
MASTER_SITES= ${MASTER_SITE_GITHUB:=chrchang/}
GITHUB_PROJECT= plink-ng
-GITHUB_TAG= 16230ed1c386312ab233ac98e414f67e28f72b4d
+GITHUB_TAG= aabd8ab97667e47373ce0411a3799d9310c92a83
MAINTAINER= bacon%NetBSD.org@localhost
HOMEPAGE= http://pngu.mgh.harvard.edu/~purcell/plink/
@@ -32,7 +32,7 @@ MAKE_FLAGS+= ZLIB=-lz BLASFLAGS64="-L${PREFIX}/lib -llapack -lcblas -lblas"
# Keep debug info until at least next beta
# INSTALL_TARGET= install-strip
-PORTVERSION= 0.0.0.20180504
+PORTVERSION= 0.0.0.20180511
USE_BUILTIN.zlib= no
.include "options.mk"
diff --git a/plink2/distinfo b/plink2/distinfo
index 2a4b13599f..8ababcbaf1 100644
--- a/plink2/distinfo
+++ b/plink2/distinfo
@@ -1,8 +1,8 @@
$NetBSD$
-SHA1 (plink-ng-0.0.0.20180504-16230ed1c386312ab233ac98e414f67e28f72b4d.tar.gz) = c1967a0d9eddc7a3609cbab8c378086154f33209
-RMD160 (plink-ng-0.0.0.20180504-16230ed1c386312ab233ac98e414f67e28f72b4d.tar.gz) = 435c7a4b4ce707e1e3aa796f2e162d1ea67927e1
-SHA512 (plink-ng-0.0.0.20180504-16230ed1c386312ab233ac98e414f67e28f72b4d.tar.gz) = 25a3010b3174367b2e5b61268eb3d00748f1026eafab4da2c77b54142fe6ca2532f7d37a5e466d8f774c7c855e9aecbbfb82c2390245791957f3b75874ca3c62
-Size (plink-ng-0.0.0.20180504-16230ed1c386312ab233ac98e414f67e28f72b4d.tar.gz) = 2363703 bytes
-SHA1 (patch-Makefile) = 6b3a3e639922fdb430b76e06a608dd25df6e528c
+SHA1 (plink-ng-0.0.0.20180511-aabd8ab97667e47373ce0411a3799d9310c92a83.tar.gz) = 312f656aadf2db13e2ceb5d075b62d98a7ab1ba6
+RMD160 (plink-ng-0.0.0.20180511-aabd8ab97667e47373ce0411a3799d9310c92a83.tar.gz) = 04967fd66db20e6ad602420e9e0fca50fcfe78ba
+SHA512 (plink-ng-0.0.0.20180511-aabd8ab97667e47373ce0411a3799d9310c92a83.tar.gz) = 13ac75941d2b0a0f65ebc28d2df64b98896ab691dff17715dfdfd241f6dbb07c0d2d645d0318c75b613d2b72c79ea422f2824cc0c18489e4f5f80d73d24331f3
+Size (plink-ng-0.0.0.20180511-aabd8ab97667e47373ce0411a3799d9310c92a83.tar.gz) = 2375640 bytes
+SHA1 (patch-Makefile) = 8fc5a80af3d576b5272f303b7e37bd849c31ca8c
SHA1 (patch-plink2__base.h) = 08cc1710f2824985dc132149ca102f82e0488bf1
diff --git a/plink2/patches/patch-Makefile b/plink2/patches/patch-Makefile
index 636dac0b20..9e23304054 100644
--- a/plink2/patches/patch-Makefile
+++ b/plink2/patches/patch-Makefile
@@ -1,13 +1,14 @@
$NetBSD$
-# Remove assumptions about advanced cpu features
-
---- Makefile.orig 2018-05-04 14:35:29.570866273 +0000
+# Remove non-portable ABI options
+--- Makefile.orig 2018-05-13 15:49:21.061390795 +0000
+++ Makefile
-@@ -1,4 +1,5 @@
+@@ -6,7 +6,7 @@
+
+ # Does not currently support -DCPU_CHECK_...
+
-BASEFLAGS=-mavx2 -mbmi -mbmi2 -mlzcnt -DNDEBUG -DZSTD_MULTITHREAD
+BASEFLAGS=-DNDEBUG -DZSTD_MULTITHREAD
-+# BASEFLAGS=-mavx2 -mbmi -mbmi2 -mlzcnt -DNDEBUG -DZSTD_MULTITHREAD
# BASEFLAGS=-mavx2 -mbmi -mbmi2 -mlzcnt -DZSTD_MULTITHREAD
- # BASEFLAGS=-msse4.2 -DNDEBUG -DZSTD_MULTITHREAD
+ # BASEFLAGS=-msse4.2 -DZSTD_MULTITHREAD
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