samtools: Remove following commit to biology

[Jason Bacon <bacon%NetBSD.org@localhost>]

Module Name:	pkgsrc-wip
Committed By:	Jason Bacon <bacon%NetBSD.org@localhost>
Pushed By:	outpaddling
Date:		Thu Jul 5 08:50:56 2018 -0500
Changeset:	0c036bda4dc25a08d97109741b8436819d693efe

Modified Files:
	Makefile
Removed Files:
	samtools/DESCR
	samtools/Makefile
	samtools/PLIST
	samtools/distinfo

Log Message:
samtools: Remove following commit to biology

To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=0c036bda4dc25a08d97109741b8436819d693efe

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

diffstat:
 Makefile          |  1 -
 samtools/DESCR    |  3 ---
 samtools/Makefile | 25 -------------------------
 samtools/PLIST    | 24 ------------------------
 samtools/distinfo |  6 ------
 5 files changed, 59 deletions(-)

diffs:
diff --git a/Makefile b/Makefile
index 18160f24a8..f9b10156e4 100644
--- a/Makefile
+++ b/Makefile
@@ -4102,7 +4102,6 @@ SUBDIR+=	sailor
 SUBDIR+=	sais
 SUBDIR+=	sais-demo-data
 SUBDIR+=	samhain
-SUBDIR+=	samtools
 SUBDIR+=	samtools0119
 SUBDIR+=	sara
 SUBDIR+=	sarf
diff --git a/samtools/DESCR b/samtools/DESCR
deleted file mode 100644
index 23d11d1c81..0000000000
--- a/samtools/DESCR
+++ /dev/null
@@ -1,3 +0,0 @@
-Samtools implements various utilities for post-processing alignments in the
-SAM, BAM, and CRAM formats, including indexing, variant calling (in conjunction
-with bcftools), and a simple alignment viewer.
diff --git a/samtools/Makefile b/samtools/Makefile
deleted file mode 100644
index 605e012fce..0000000000
--- a/samtools/Makefile
+++ /dev/null
@@ -1,25 +0,0 @@
-# $NetBSD$
-
-DISTNAME=	samtools-1.8
-CATEGORIES=	biology
-MASTER_SITES=	${MASTER_SITE_GITHUB:=samtools/}
-GITHUB_TAG=	${PKGVERSION_NOREV}
-
-MAINTAINER=	bacon%NetBSD.org@localhost
-HOMEPAGE=	http://www.htslib.org/
-COMMENT=	Tools for manipulating next-generation sequencing data
-LICENSE=	mit
-
-USE_TOOLS+=	autoconf automake autoreconf gmake perl:run
-GNU_CONFIGURE=	yes
-REPLACE_PERL=	misc/*.pl misc/plot-bamstats test/test.pl
-REPLACE_PYTHON=	misc/*.py
-
-pre-configure:
-	cd ${WRKSRC} && autoreconf
-
-.include "../../mk/curses.buildlink3.mk"
-.include "../../lang/python/application.mk"
-.include "../../biology/htslib/buildlink3.mk"
-.include "../../devel/zlib/buildlink3.mk"
-.include "../../mk/bsd.pkg.mk"
diff --git a/samtools/PLIST b/samtools/PLIST
deleted file mode 100644
index 5ab65fe32e..0000000000
--- a/samtools/PLIST
+++ /dev/null
@@ -1,24 +0,0 @@
-@comment $NetBSD$
-bin/ace2sam
-bin/blast2sam.pl
-bin/bowtie2sam.pl
-bin/export2sam.pl
-bin/interpolate_sam.pl
-bin/maq2sam-long
-bin/maq2sam-short
-bin/md5fa
-bin/md5sum-lite
-bin/novo2sam.pl
-bin/plot-bamstats
-bin/psl2sam.pl
-bin/sam2vcf.pl
-bin/samtools
-bin/samtools.pl
-bin/seq_cache_populate.pl
-bin/soap2sam.pl
-bin/varfilter.py
-bin/wgsim
-bin/wgsim_eval.pl
-bin/zoom2sam.pl
-man/man1/samtools.1
-man/man1/wgsim.1
diff --git a/samtools/distinfo b/samtools/distinfo
deleted file mode 100644
index 6cb4604d92..0000000000
--- a/samtools/distinfo
+++ /dev/null
@@ -1,6 +0,0 @@
-$NetBSD$
-
-SHA1 (samtools-1.8.tar.gz) = 5ac70ba4c324c223398ab4c0689933564985303c
-RMD160 (samtools-1.8.tar.gz) = 47e4fde82a686669322fd330374aa37b148b7954
-SHA512 (samtools-1.8.tar.gz) = 82e4d5f855f944cc989902154a99eada2b4c81939bd936fa1d471cf9ff01e03c8a7f773928ae55ef691f2827aa4076126678940bb89a322fa56d83c517677d0c
-Size (samtools-1.8.tar.gz) = 4047378 bytes