uchime: adding uchime

[Dan Siercks <dsiercks%uwm.edu@localhost>]

Module Name:	pkgsrc-wip
Committed By:	Dan Siercks <dsiercks%uwm.edu@localhost>
Pushed By:	dsiercks
Date:		Fri Aug 17 13:47:17 2018 -0500
Changeset:	46574e5df7fbc33531c339ecc9d9b09cdd3e70b2

Modified Files:
	Makefile
Added Files:
	uchime/DESCR
	uchime/Makefile
	uchime/PLIST
	uchime/distinfo

Log Message:
uchime: adding uchime

To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=46574e5df7fbc33531c339ecc9d9b09cdd3e70b2

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

diffstat:
 Makefile        |  1 +
 uchime/DESCR    |  2 ++
 uchime/Makefile | 69 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++
 uchime/PLIST    |  1 +
 uchime/distinfo |  6 +++++
 5 files changed, 79 insertions(+)

diffs:
diff --git a/Makefile b/Makefile
index b17f58d0e9..43f86c83ee 100644
--- a/Makefile
+++ b/Makefile
@@ -4452,6 +4452,7 @@ SUBDIR+=	u-boot-full
 SUBDIR+=	uTox-git
 SUBDIR+=	uade
 SUBDIR+=	ubit
+SUBDIR+=	uchime
 SUBDIR+=	uclibc
 SUBDIR+=	udhcp
 SUBDIR+=	udp-ping
diff --git a/uchime/DESCR b/uchime/DESCR
new file mode 100644
index 0000000000..da8d474938
--- /dev/null
+++ b/uchime/DESCR
@@ -0,0 +1,2 @@
+UCHIME is an algorithm for detecting chimeric sequences. It is implemented in
+the uchime_ref and uchime_denovo commands.
diff --git a/uchime/Makefile b/uchime/Makefile
new file mode 100644
index 0000000000..b25b71f18d
--- /dev/null
+++ b/uchime/Makefile
@@ -0,0 +1,69 @@
+# $NetBSD$
+#
+###########################################################
+#                  Generated by fbsd2pkg                  #
+#              Tue Jul 31 12:32:39 CDT 2018               #
+###########################################################
+
+###########################################################
+# Unconverted and partially converted FreeBSD port syntax:
+
+## $FreeBSD$
+# BUILD_DEPENDS=	bash:shells/bash
+#SHEBANG_FILES=	mk
+#PLIST_FILES=	bin/uchime
+#post-patch:
+# 	${REINPLACE_CMD} -e 's|g++|${CXX}|g' ${WRKSRC}/mk
+
+
+#do-install:
+#	${INSTALL_PROGRAM} ${WRKSRC}/uchime ${DESTDIR}${PREFIX}/bin
+#.include <bsd.port.mk>
+
+DISTNAME=	uchime4.2.40_src
+PKGNAME=	uchime-${PORTVERSION}
+CATEGORIES=	wip
+MASTER_SITES=	http://drive5.com/uchime/
+
+MAINTAINER=	dsiercks%uwm.edu@localhost
+HOMEPAGE=	http://drive5.com/usearch/manual/uchime_algo.html
+COMMENT=	Algorithm for detecting chimeric sequences
+# Check this
+LICENSE=	public-domain
+
+# Test and change if necessary.
+# MAKE_JOBS_SAFE=	no
+
+# Just assuming C and C++: Adjust this!
+USE_LANGUAGES=	c c++
+# FreeBSD's SHEBANG_FILES may include bash, perl, python, etc.
+# I don't know which is which, so you'll have to finish.
+# Add bash, etc. to USE_TOOLS if used below.
+# 
+BUILD_TARGET=	 uchime
+
+PORTVERSION=	4.2.40
+DATADIR=	${PREFIX}/share/uchime
+DOCSDIR=	${PREFIX}/share/doc/uchime
+EXAMPLESDIR=	${PREFIX}/share/examples/uchime
+
+SUBST_CLASSES+=                1
+SUBST_STAGE.1= post-patch
+SUBST_SED.1+=  -e 's|g++|${CXX}|g'
+SUBST_FILES.1+=        ${WRKSRC}/mk
+
+# Sets OPSYS, OS_VERSION, MACHINE_ARCH, etc..
+# .include "../../mk/bsd.prefs.mk"
+
+# Keep this if there are user-selectable options.
+# .include "options.mk"
+
+# Specify which directories to create before install.
+# You should only need this if using your own install target.
+INSTALLATION_DIRS=	bin include lib ${PKGMANDIR}/man1 share/doc share/examples
+
+# Convert any _DEPENDS above that have a buildlink3.mk
+# .include "../..///buildlink3.mk"
+# Linux doesn't have zlib in the base, so just in case...
+# .include "../../devel/zlib/buildlink3.mk"
+.include "../../mk/bsd.pkg.mk"
diff --git a/uchime/PLIST b/uchime/PLIST
new file mode 100644
index 0000000000..48d96a5493
--- /dev/null
+++ b/uchime/PLIST
@@ -0,0 +1 @@
+@comment $NetBSD$
diff --git a/uchime/distinfo b/uchime/distinfo
new file mode 100644
index 0000000000..01984beb30
--- /dev/null
+++ b/uchime/distinfo
@@ -0,0 +1,6 @@
+$NetBSD$
+
+SHA1 (uchime4.2.40_src.tar.gz) = d1d95e82ff9fa6c643a347698fe557461e776a08
+RMD160 (uchime4.2.40_src.tar.gz) = c1ebdeb47bb791d95307a28ec0769f017e0fa186
+SHA512 (uchime4.2.40_src.tar.gz) = c3afecb23d164d9c3db6229f54faa13120ac4d88132d9aef707f8d043091099db4205ac80f60242920af6efc23813b3e7e4966d562bdb75ff53244fd525e656b
+Size (uchime4.2.40_src.tar.gz) = 66772 bytes