py-eggnog-mapper: Fast functional annotation of novel DNA or protein sequences

[Jason Bacon <bacon%NetBSD.org@localhost>]

Module Name:	pkgsrc-wip
Committed By:	Jason Bacon <bacon%NetBSD.org@localhost>
Pushed By:	outpaddling
Date:		Mon Nov 5 13:13:51 2018 -0600
Changeset:	7af41b43b6e7893cfd15e9e008d01d69f97dbf15

Modified Files:
	Makefile
Added Files:
	py-eggnog-mapper/DESCR
	py-eggnog-mapper/Makefile
	py-eggnog-mapper/PLIST
	py-eggnog-mapper/distinfo

Log Message:
py-eggnog-mapper: Fast functional annotation of novel DNA or protein sequences

To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=7af41b43b6e7893cfd15e9e008d01d69f97dbf15

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

diffstat:
 Makefile                  |  1 +
 py-eggnog-mapper/DESCR    |  7 +++++++
 py-eggnog-mapper/Makefile | 24 ++++++++++++++++++++++++
 py-eggnog-mapper/PLIST    | 32 ++++++++++++++++++++++++++++++++
 py-eggnog-mapper/distinfo |  6 ++++++
 5 files changed, 70 insertions(+)

diffs:
diff --git a/Makefile b/Makefile
index c744f0714a..a1609aa750 100644
--- a/Makefile
+++ b/Makefile
@@ -3233,6 +3233,7 @@ SUBDIR+=	py-easymodeler
 SUBDIR+=	py-ecos
 SUBDIR+=	py-ecspy
 SUBDIR+=	py-eemeter
+SUBDIR+=	py-eggnog-mapper
 SUBDIR+=	py-eigency
 SUBDIR+=	py-email-reply-parser
 SUBDIR+=	py-embedc
diff --git a/py-eggnog-mapper/DESCR b/py-eggnog-mapper/DESCR
new file mode 100644
index 0000000000..b8847c4f15
--- /dev/null
+++ b/py-eggnog-mapper/DESCR
@@ -0,0 +1,7 @@
+eggnog-mapper is a tool for fast functional annotation of novel sequences
+(genes or proteins) using precomputed eggNOG-based orthology assignments.
+Obvious examples include the annotation of novel genomes, transcriptomes or
+even metagenomic gene catalogs. The use of orthology predictions for functional
+annotation is considered more precise than traditional homology searches, as it
+avoids transferring annotations from paralogs (duplicate genes with a higher
+chance of being involved in functional divergence).
diff --git a/py-eggnog-mapper/Makefile b/py-eggnog-mapper/Makefile
new file mode 100644
index 0000000000..f0afc7a631
--- /dev/null
+++ b/py-eggnog-mapper/Makefile
@@ -0,0 +1,24 @@
+# $NetBSD$
+#
+###########################################################
+#                  Generated by fbsd2pkg                  #
+#              Mon Nov  5 13:03:54 CST 2018               #
+###########################################################
+
+DISTNAME=	eggnog-mapper-${PV}
+PKGNAME=	${PYPKGPREFIX}-eggnog-mapper-${PV}
+CATEGORIES=	python
+MASTER_SITES=	${MASTER_SITE_GITHUB:=jhcepas/}
+GITHUB_PROJECT=	eggnog-mapper
+GITHUB_TAG=	${PV}
+
+MAINTAINER=	bacon%NetBSD.org@localhost
+HOMEPAGE=	https://github.com/jhcepas/eggnog-mapper
+COMMENT=	Fast functional annotation of novel DNA or protein sequences
+LICENSE=	gnu-gpl-v2
+
+PV=		1.0.3
+
+.include "../../lang/python/egg.mk"
+#.include "../../lang/python/application.mk"
+.include "../../mk/bsd.pkg.mk"
diff --git a/py-eggnog-mapper/PLIST b/py-eggnog-mapper/PLIST
new file mode 100644
index 0000000000..542027fd23
--- /dev/null
+++ b/py-eggnog-mapper/PLIST
@@ -0,0 +1,32 @@
+@comment $NetBSD$
+${PYSITELIB}/eggnogmapper-1.0-py${PYVERSSUFFIX}.egg-info/PKG-INFO
+${PYSITELIB}/eggnogmapper-1.0-py${PYVERSSUFFIX}.egg-info/SOURCES.txt
+${PYSITELIB}/eggnogmapper-1.0-py${PYVERSSUFFIX}.egg-info/dependency_links.txt
+${PYSITELIB}/eggnogmapper-1.0-py${PYVERSSUFFIX}.egg-info/top_level.txt
+${PYSITELIB}/eggnogmapper/__init__.py
+${PYSITELIB}/eggnogmapper/__init__.pyc
+${PYSITELIB}/eggnogmapper/__init__.pyo
+${PYSITELIB}/eggnogmapper/annota.py
+${PYSITELIB}/eggnogmapper/annota.pyc
+${PYSITELIB}/eggnogmapper/annota.pyo
+${PYSITELIB}/eggnogmapper/annota_mongo.py
+${PYSITELIB}/eggnogmapper/annota_mongo.pyc
+${PYSITELIB}/eggnogmapper/annota_mongo.pyo
+${PYSITELIB}/eggnogmapper/common.py
+${PYSITELIB}/eggnogmapper/common.pyc
+${PYSITELIB}/eggnogmapper/common.pyo
+${PYSITELIB}/eggnogmapper/search.py
+${PYSITELIB}/eggnogmapper/search.pyc
+${PYSITELIB}/eggnogmapper/search.pyo
+${PYSITELIB}/eggnogmapper/seqio.py
+${PYSITELIB}/eggnogmapper/seqio.pyc
+${PYSITELIB}/eggnogmapper/seqio.pyo
+${PYSITELIB}/eggnogmapper/server.py
+${PYSITELIB}/eggnogmapper/server.pyc
+${PYSITELIB}/eggnogmapper/server.pyo
+${PYSITELIB}/eggnogmapper/utils.py
+${PYSITELIB}/eggnogmapper/utils.pyc
+${PYSITELIB}/eggnogmapper/utils.pyo
+${PYSITELIB}/eggnogmapper/version.py
+${PYSITELIB}/eggnogmapper/version.pyc
+${PYSITELIB}/eggnogmapper/version.pyo
diff --git a/py-eggnog-mapper/distinfo b/py-eggnog-mapper/distinfo
new file mode 100644
index 0000000000..e2433f2155
--- /dev/null
+++ b/py-eggnog-mapper/distinfo
@@ -0,0 +1,6 @@
+$NetBSD$
+
+SHA1 (eggnog-mapper-1.0.3.tar.gz) = 8018f0f2556c31b9b7b5d99dcaffe55518c4becc
+RMD160 (eggnog-mapper-1.0.3.tar.gz) = 819cc711a801c234694aedddf1e3475b9919440c
+SHA512 (eggnog-mapper-1.0.3.tar.gz) = 4d53f8455dc4edf4587a75359cc9b884758f2541c9d9a02994fa009b43aecb6e8ed8dafb4b02906709b6c1c6d8fb0e059000cba59cad70d01d482fb5b4fbb8bf
+Size (eggnog-mapper-1.0.3.tar.gz) = 37713129 bytes