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ddocent: Clean up, change wip deps to committed categories
Module Name: pkgsrc-wip
Committed By: Jason Bacon <bacon%NetBSD.org@localhost>
Pushed By: outpaddling
Date: Sat May 4 11:33:23 2019 -0500
Changeset: faa64e7463a86eefdc5c09e5721931348178f111
Modified Files:
ddocent/Makefile
Log Message:
ddocent: Clean up, change wip deps to committed categories
To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=faa64e7463a86eefdc5c09e5721931348178f111
Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.
diffstat:
ddocent/Makefile | 34 +++++++++++++++++-----------------
1 file changed, 17 insertions(+), 17 deletions(-)
diffs:
diff --git a/ddocent/Makefile b/ddocent/Makefile
index 33fcefb6dc..aeb575c83e 100644
--- a/ddocent/Makefile
+++ b/ddocent/Makefile
@@ -20,23 +20,23 @@ LICENSE= mit
# New ddocent works with 2.23.0 or >= 2.26.0
# Do we really need trimadap? It used to be part of seqtk.
# ddocent test data do not unpack with FreeBSD 11.1 /usr/bin/unzip
-DEPENDS= mawk>=0:../../lang/mawk \
- gawk>=0:../../lang/gawk \
- coreutils>=0:../../sysutils/coreutils \
- gnuplot>=0:../../graphics/gnuplot \
- parallel>=0:../../parallel/parallel \
- bwa>=0.7.13:../../biology/bwa \
- cdhit>=0:../../biology/cdhit \
- samtools>=1.3:../../biology/samtools \
- vcftools>=0.1.15:../../wip/vcftools \
- Trimmomatic>=0:../../biology/trimmomatic \
- stacks>=0:../../biology/stacks \
- rainbow>=0:../../wip/rainbow \
- trimadap>=0:../../wip/trimadap \
- seqtk>=0:../../wip/seqtk \
- bedtools2>=2.26.0:../../wip/bedtools2 \
- pear-merger>=0:../../wip/pear-merger \
- freebayes>=0:../../wip/freebayes
+DEPENDS= mawk>=0:../../lang/mawk
+DEPENDS+= gawk>=0:../../lang/gawk
+DEPENDS+= coreutils>=0:../../sysutils/coreutils
+DEPENDS+= gnuplot>=0:../../graphics/gnuplot
+DEPENDS+= parallel>=0:../../parallel/parallel
+DEPENDS+= bwa>=0.7.13:../../biology/bwa
+DEPENDS+= cdhit>=0:../../biology/cdhit
+DEPENDS+= samtools>=1.3:../../biology/samtools
+DEPENDS+= vcftools>=0.1.15:../../wip/vcftools
+DEPENDS+= Trimmomatic>=0:../../biology/trimmomatic
+DEPENDS+= stacks>=0:../../biology/stacks
+DEPENDS+= rainbow>=0:../../wip/rainbow
+DEPENDS+= trimadap>=0:../../wip/trimadap
+DEPENDS+= seqtk>=0:../../wip/seqtk
+DEPENDS+= bedtools2>=2.26.0:../../wip/bedtools2
+DEPENDS+= pear-merger>=0:../../wip/pear-merger
+DEPENDS+= freebayes>=0:../../wip/freebayes
## These follow patch-dDocent, so don't apply them within the source tree,
## or they'll get picked up by patch generators and hard-code PREFIX
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