wip/py-scipy: update to scipy-1.6.0, also added "${FIND} ${WRKSRC} -type f -exec ${CHMOD} go-w {} +" to avoid group writable file errors.

To: pkgsrc-wip-changes%NetBSD.org@localhost
Subject: wip/py-scipy: update to scipy-1.6.0, also added "${FIND} ${WRKSRC} -type f -exec ${CHMOD} go-w {} +" to avoid group writable file errors.
From: Kinoshita Daisuke <kinoshita%astro.ncu.edu.tw@localhost>
Date: Fri, 08 Jan 2021 10:37:41 +0000
Module Name:	pkgsrc-wip
Committed By:	Kinoshita Daisuke <kinoshita%astro.ncu.edu.tw@localhost>
Pushed By:	daisuke
Date:		Fri Jan 8 18:37:41 2021 +0800
Changeset:	9480bdf4455606aeeef224254fe3ae16747e4321

Modified Files:
	py-scipy/Makefile
	py-scipy/PLIST
	py-scipy/distinfo

Log Message:
wip/py-scipy: update to scipy-1.6.0, also added "${FIND} ${WRKSRC} -type f -exec ${CHMOD} go-w {} +" to avoid group writable file errors.

To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=9480bdf4455606aeeef224254fe3ae16747e4321

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

diffstat:
 py-scipy/Makefile |  2 +-
 py-scipy/PLIST    | 60 +++++++++++++++++++++++++++++++++++++++++++++++--------
 py-scipy/distinfo |  8 ++++----
 3 files changed, 57 insertions(+), 13 deletions(-)

diffs:
diff --git a/py-scipy/Makefile b/py-scipy/Makefile
index 9ff5b59f92..630c038e21 100644
--- a/py-scipy/Makefile
+++ b/py-scipy/Makefile
@@ -1,6 +1,6 @@
 # $NetBSD$
 
-DISTNAME=	scipy-1.5.4
+DISTNAME=	scipy-1.6.0
 PKGNAME=	${PYPKGPREFIX}-${DISTNAME}
 CATEGORIES=	math python
 MASTER_SITES=	${MASTER_SITE_PYPI:=s/scipy/}
diff --git a/py-scipy/PLIST b/py-scipy/PLIST
index d2c6baf4cb..64e6699269 100644
--- a/py-scipy/PLIST
+++ b/py-scipy/PLIST
@@ -2,11 +2,11 @@
 ${PYSITELIB}/${EGG_FILE}/PKG-INFO
 ${PYSITELIB}/${EGG_FILE}/SOURCES.txt
 ${PYSITELIB}/${EGG_FILE}/dependency_links.txt
+${PYSITELIB}/${EGG_FILE}/requires.txt
 ${PYSITELIB}/${EGG_FILE}/top_level.txt
 ${PYSITELIB}/scipy/HACKING.rst.txt
 ${PYSITELIB}/scipy/INSTALL.rst.txt
 ${PYSITELIB}/scipy/LICENSE.txt
-${PYSITELIB}/scipy/THANKS.txt
 ${PYSITELIB}/scipy/__config__.py
 ${PYSITELIB}/scipy/__config__.pyc
 ${PYSITELIB}/scipy/__config__.pyo
@@ -29,7 +29,6 @@ ${PYSITELIB}/scipy/_build_utils/system_info.py
 ${PYSITELIB}/scipy/_build_utils/system_info.pyc
 ${PYSITELIB}/scipy/_build_utils/system_info.pyo
 ${PYSITELIB}/scipy/_build_utils/tests/__init__.py
-${PYSITELIB}/scipy/_build_utils/tests/test_circular_imports.py
 ${PYSITELIB}/scipy/_build_utils/tests/test_scipy_version.py
 ${PYSITELIB}/scipy/_distributor_init.py
 ${PYSITELIB}/scipy/_distributor_init.pyc
@@ -37,10 +36,16 @@ ${PYSITELIB}/scipy/_distributor_init.pyo
 ${PYSITELIB}/scipy/_lib/__init__.py
 ${PYSITELIB}/scipy/_lib/__init__.pyc
 ${PYSITELIB}/scipy/_lib/__init__.pyo
+${PYSITELIB}/scipy/_lib/_bunch.py
+${PYSITELIB}/scipy/_lib/_bunch.pyc
+${PYSITELIB}/scipy/_lib/_bunch.pyo
 ${PYSITELIB}/scipy/_lib/_ccallback.py
 ${PYSITELIB}/scipy/_lib/_ccallback.pyc
 ${PYSITELIB}/scipy/_lib/_ccallback.pyo
 ${PYSITELIB}/scipy/_lib/_ccallback_c.so
+${PYSITELIB}/scipy/_lib/_disjoint_set.py
+${PYSITELIB}/scipy/_lib/_disjoint_set.pyc
+${PYSITELIB}/scipy/_lib/_disjoint_set.pyo
 ${PYSITELIB}/scipy/_lib/_fpumode.so
 ${PYSITELIB}/scipy/_lib/_gcutils.py
 ${PYSITELIB}/scipy/_lib/_gcutils.pyc
@@ -93,9 +98,11 @@ ${PYSITELIB}/scipy/_lib/tests/test__pep440.py
 ${PYSITELIB}/scipy/_lib/tests/test__testutils.py
 ${PYSITELIB}/scipy/_lib/tests/test__threadsafety.py
 ${PYSITELIB}/scipy/_lib/tests/test__util.py
+${PYSITELIB}/scipy/_lib/tests/test_bunch.py
 ${PYSITELIB}/scipy/_lib/tests/test_ccallback.py
 ${PYSITELIB}/scipy/_lib/tests/test_deprecation.py
 ${PYSITELIB}/scipy/_lib/tests/test_import_cycles.py
+${PYSITELIB}/scipy/_lib/tests/test_linear_assignment.py
 ${PYSITELIB}/scipy/_lib/tests/test_tmpdirs.py
 ${PYSITELIB}/scipy/_lib/tests/test_warnings.py
 ${PYSITELIB}/scipy/_lib/uarray.py
@@ -115,6 +122,7 @@ ${PYSITELIB}/scipy/cluster/setup.pyc
 ${PYSITELIB}/scipy/cluster/setup.pyo
 ${PYSITELIB}/scipy/cluster/tests/__init__.py
 ${PYSITELIB}/scipy/cluster/tests/hierarchy_test_data.py
+${PYSITELIB}/scipy/cluster/tests/test_disjoint_set.py
 ${PYSITELIB}/scipy/cluster/tests/test_hierarchy.py
 ${PYSITELIB}/scipy/cluster/tests/test_vq.py
 ${PYSITELIB}/scipy/cluster/vq.py
@@ -375,6 +383,7 @@ ${PYSITELIB}/scipy/io/arff/tests/data/quoted_nominal.arff
 ${PYSITELIB}/scipy/io/arff/tests/data/quoted_nominal_spaces.arff
 ${PYSITELIB}/scipy/io/arff/tests/data/test1.arff
 ${PYSITELIB}/scipy/io/arff/tests/data/test10.arff
+${PYSITELIB}/scipy/io/arff/tests/data/test11.arff
 ${PYSITELIB}/scipy/io/arff/tests/data/test2.arff
 ${PYSITELIB}/scipy/io/arff/tests/data/test3.arff
 ${PYSITELIB}/scipy/io/arff/tests/data/test4.arff
@@ -633,8 +642,16 @@ ${PYSITELIB}/scipy/io/tests/data/test-44100Hz-le-1ch-4bytes-early-eof.wav
 ${PYSITELIB}/scipy/io/tests/data/test-44100Hz-le-1ch-4bytes-incomplete-chunk.wav
 ${PYSITELIB}/scipy/io/tests/data/test-44100Hz-le-1ch-4bytes.wav
 ${PYSITELIB}/scipy/io/tests/data/test-48000Hz-2ch-64bit-float-le-wavex.wav
+${PYSITELIB}/scipy/io/tests/data/test-8000Hz-le-1ch-10S-20bit-extra.wav
 ${PYSITELIB}/scipy/io/tests/data/test-8000Hz-le-1ch-1byte-ulaw.wav
 ${PYSITELIB}/scipy/io/tests/data/test-8000Hz-le-2ch-1byteu.wav
+${PYSITELIB}/scipy/io/tests/data/test-8000Hz-le-3ch-5S-24bit.wav
+${PYSITELIB}/scipy/io/tests/data/test-8000Hz-le-3ch-5S-36bit.wav
+${PYSITELIB}/scipy/io/tests/data/test-8000Hz-le-3ch-5S-45bit.wav
+${PYSITELIB}/scipy/io/tests/data/test-8000Hz-le-3ch-5S-53bit.wav
+${PYSITELIB}/scipy/io/tests/data/test-8000Hz-le-3ch-5S-64bit.wav
+${PYSITELIB}/scipy/io/tests/data/test-8000Hz-le-4ch-9S-12bit.wav
+${PYSITELIB}/scipy/io/tests/data/test-8000Hz-le-5ch-9S-5bit.wav
 ${PYSITELIB}/scipy/io/tests/data/various_compressed.sav
 ${PYSITELIB}/scipy/io/tests/test_fortran.py
 ${PYSITELIB}/scipy/io/tests/test_idl.py
@@ -684,6 +701,7 @@ ${PYSITELIB}/scipy/linalg/_matfuncs_inv_ssq.pyo
 ${PYSITELIB}/scipy/linalg/_matfuncs_sqrtm.py
 ${PYSITELIB}/scipy/linalg/_matfuncs_sqrtm.pyc
 ${PYSITELIB}/scipy/linalg/_matfuncs_sqrtm.pyo
+${PYSITELIB}/scipy/linalg/_matfuncs_sqrtm_triu.so
 ${PYSITELIB}/scipy/linalg/_procrustes.py
 ${PYSITELIB}/scipy/linalg/_procrustes.pyc
 ${PYSITELIB}/scipy/linalg/_procrustes.pyo
@@ -770,6 +788,7 @@ ${PYSITELIB}/scipy/linalg/tests/test_fblas.py
 ${PYSITELIB}/scipy/linalg/tests/test_interpolative.py
 ${PYSITELIB}/scipy/linalg/tests/test_lapack.py
 ${PYSITELIB}/scipy/linalg/tests/test_matfuncs.py
+${PYSITELIB}/scipy/linalg/tests/test_matmul_toeplitz.py
 ${PYSITELIB}/scipy/linalg/tests/test_procrustes.py
 ${PYSITELIB}/scipy/linalg/tests/test_sketches.py
 ${PYSITELIB}/scipy/linalg/tests/test_solve_toeplitz.py
@@ -798,7 +817,6 @@ ${PYSITELIB}/scipy/ndimage/__init__.py
 ${PYSITELIB}/scipy/ndimage/__init__.pyc
 ${PYSITELIB}/scipy/ndimage/__init__.pyo
 ${PYSITELIB}/scipy/ndimage/_ctest.so
-${PYSITELIB}/scipy/ndimage/_ctest_oldapi.so
 ${PYSITELIB}/scipy/ndimage/_cytest.so
 ${PYSITELIB}/scipy/ndimage/_nd_image.so
 ${PYSITELIB}/scipy/ndimage/_ni_docstrings.py
@@ -835,10 +853,10 @@ ${PYSITELIB}/scipy/ndimage/tests/dots.png
 ${PYSITELIB}/scipy/ndimage/tests/test_c_api.py
 ${PYSITELIB}/scipy/ndimage/tests/test_datatypes.py
 ${PYSITELIB}/scipy/ndimage/tests/test_filters.py
+${PYSITELIB}/scipy/ndimage/tests/test_fourier.py
+${PYSITELIB}/scipy/ndimage/tests/test_interpolation.py
 ${PYSITELIB}/scipy/ndimage/tests/test_measurements.py
 ${PYSITELIB}/scipy/ndimage/tests/test_morphology.py
-${PYSITELIB}/scipy/ndimage/tests/test_ndimage.py
-${PYSITELIB}/scipy/ndimage/tests/test_regression.py
 ${PYSITELIB}/scipy/ndimage/tests/test_splines.py
 ${PYSITELIB}/scipy/odr/__init__.py
 ${PYSITELIB}/scipy/odr/__init__.pyc
@@ -884,10 +902,32 @@ ${PYSITELIB}/scipy/optimize/_group_columns.so
 ${PYSITELIB}/scipy/optimize/_hessian_update_strategy.py
 ${PYSITELIB}/scipy/optimize/_hessian_update_strategy.pyc
 ${PYSITELIB}/scipy/optimize/_hessian_update_strategy.pyo
+${PYSITELIB}/scipy/optimize/_highs/constants.so
+${PYSITELIB}/scipy/optimize/_highs/cython/src/HConst.pxd
+${PYSITELIB}/scipy/optimize/_highs/cython/src/Highs.pxd
+${PYSITELIB}/scipy/optimize/_highs/cython/src/HighsIO.pxd
+${PYSITELIB}/scipy/optimize/_highs/cython/src/HighsInfo.pxd
+${PYSITELIB}/scipy/optimize/_highs/cython/src/HighsLp.pxd
+${PYSITELIB}/scipy/optimize/_highs/cython/src/HighsLpUtils.pxd
+${PYSITELIB}/scipy/optimize/_highs/cython/src/HighsMipSolver.pxd
+${PYSITELIB}/scipy/optimize/_highs/cython/src/HighsModelUtils.pxd
+${PYSITELIB}/scipy/optimize/_highs/cython/src/HighsOptions.pxd
+${PYSITELIB}/scipy/optimize/_highs/cython/src/HighsRuntimeOptions.pxd
+${PYSITELIB}/scipy/optimize/_highs/cython/src/HighsStatus.pxd
+${PYSITELIB}/scipy/optimize/_highs/cython/src/SimplexConst.pxd
+${PYSITELIB}/scipy/optimize/_highs/cython/src/highs_c_api.pxd
+${PYSITELIB}/scipy/optimize/_highs/highs_wrapper.so
+${PYSITELIB}/scipy/optimize/_highs/mpswriter.so
 ${PYSITELIB}/scipy/optimize/_lbfgsb.so
 ${PYSITELIB}/scipy/optimize/_linprog.py
 ${PYSITELIB}/scipy/optimize/_linprog.pyc
 ${PYSITELIB}/scipy/optimize/_linprog.pyo
+${PYSITELIB}/scipy/optimize/_linprog_doc.py
+${PYSITELIB}/scipy/optimize/_linprog_doc.pyc
+${PYSITELIB}/scipy/optimize/_linprog_doc.pyo
+${PYSITELIB}/scipy/optimize/_linprog_highs.py
+${PYSITELIB}/scipy/optimize/_linprog_highs.pyc
+${PYSITELIB}/scipy/optimize/_linprog_highs.pyo
 ${PYSITELIB}/scipy/optimize/_linprog_ip.py
 ${PYSITELIB}/scipy/optimize/_linprog_ip.pyc
 ${PYSITELIB}/scipy/optimize/_linprog_ip.pyo
@@ -942,6 +982,9 @@ ${PYSITELIB}/scipy/optimize/_nnls.pyo
 ${PYSITELIB}/scipy/optimize/_numdiff.py
 ${PYSITELIB}/scipy/optimize/_numdiff.pyc
 ${PYSITELIB}/scipy/optimize/_numdiff.pyo
+${PYSITELIB}/scipy/optimize/_qap.py
+${PYSITELIB}/scipy/optimize/_qap.pyc
+${PYSITELIB}/scipy/optimize/_qap.pyo
 ${PYSITELIB}/scipy/optimize/_remove_redundancy.py
 ${PYSITELIB}/scipy/optimize/_remove_redundancy.pyc
 ${PYSITELIB}/scipy/optimize/_remove_redundancy.pyo
@@ -1089,6 +1132,7 @@ ${PYSITELIB}/scipy/optimize/tests/test_minpack.py
 ${PYSITELIB}/scipy/optimize/tests/test_nnls.py
 ${PYSITELIB}/scipy/optimize/tests/test_nonlin.py
 ${PYSITELIB}/scipy/optimize/tests/test_optimize.py
+${PYSITELIB}/scipy/optimize/tests/test_quadratic_assignment.py
 ${PYSITELIB}/scipy/optimize/tests/test_regression.py
 ${PYSITELIB}/scipy/optimize/tests/test_slsqp.py
 ${PYSITELIB}/scipy/optimize/tests/test_tnc.py
@@ -1165,6 +1209,7 @@ ${PYSITELIB}/scipy/signal/tests/test_fir_filter_design.py
 ${PYSITELIB}/scipy/signal/tests/test_ltisys.py
 ${PYSITELIB}/scipy/signal/tests/test_max_len_seq.py
 ${PYSITELIB}/scipy/signal/tests/test_peak_finding.py
+${PYSITELIB}/scipy/signal/tests/test_result_type.py
 ${PYSITELIB}/scipy/signal/tests/test_savitzky_golay.py
 ${PYSITELIB}/scipy/signal/tests/test_signaltools.py
 ${PYSITELIB}/scipy/signal/tests/test_spectral.py
@@ -1482,9 +1527,7 @@ ${PYSITELIB}/scipy/spatial/transform/_rotation_groups.pyo
 ${PYSITELIB}/scipy/spatial/transform/_rotation_spline.py
 ${PYSITELIB}/scipy/spatial/transform/_rotation_spline.pyc
 ${PYSITELIB}/scipy/spatial/transform/_rotation_spline.pyo
-${PYSITELIB}/scipy/spatial/transform/rotation.py
-${PYSITELIB}/scipy/spatial/transform/rotation.pyc
-${PYSITELIB}/scipy/spatial/transform/rotation.pyo
+${PYSITELIB}/scipy/spatial/transform/rotation.so
 ${PYSITELIB}/scipy/spatial/transform/setup.py
 ${PYSITELIB}/scipy/spatial/transform/setup.pyc
 ${PYSITELIB}/scipy/spatial/transform/setup.pyo
@@ -1724,6 +1767,7 @@ ${PYSITELIB}/scipy/stats/tests/test_discrete_basic.py
 ${PYSITELIB}/scipy/stats/tests/test_discrete_distns.py
 ${PYSITELIB}/scipy/stats/tests/test_distributions.py
 ${PYSITELIB}/scipy/stats/tests/test_fit.py
+${PYSITELIB}/scipy/stats/tests/test_hypotests.py
 ${PYSITELIB}/scipy/stats/tests/test_kdeoth.py
 ${PYSITELIB}/scipy/stats/tests/test_morestats.py
 ${PYSITELIB}/scipy/stats/tests/test_mstats_basic.py
diff --git a/py-scipy/distinfo b/py-scipy/distinfo
index d31a6c93d1..cd67963d72 100644
--- a/py-scipy/distinfo
+++ b/py-scipy/distinfo
@@ -1,6 +1,6 @@
 $NetBSD$
 
-SHA1 (scipy-1.5.4.tar.gz) = ffbc97517d08d8a5b290c7a5dd6cda0c730ed531
-RMD160 (scipy-1.5.4.tar.gz) = c09b9a5e3bd59cae29b45a71bb0a02d38567cd56
-SHA512 (scipy-1.5.4.tar.gz) = d23f68911a8880f87767819750d4d175ba8f9c72fcb9b8080305ee65722c046d4485fde4f0c85cc53c46247dd99813afe675a38b3b0569a683ddc2c2e021b8fc
-Size (scipy-1.5.4.tar.gz) = 25237512 bytes
+SHA1 (scipy-1.6.0.tar.gz) = 39cb8936d92ed00c27e03ab32d655e51d410fc99
+RMD160 (scipy-1.6.0.tar.gz) = 19c0b5a68fd51a2702f7289be9495a6a07e72397
+SHA512 (scipy-1.6.0.tar.gz) = 995ffaf56b713cdd4bdb98d8525b892e9ad84a511878b43213cb71a67f34d87c111da36cf1e0b044c75c0d5af64bfde4ad0f3e9c5e71cae2dbf053251f37064e
+Size (scipy-1.6.0.tar.gz) = 27275413 bytes
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