pkgsrc-WIP-changes archive
[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index][Old Index]
Remove fastqc: Not likely to be upgraded soon
Module Name: pkgsrc-wip
Committed By: Jason Bacon <bacon%NetBSD.org@localhost>
Pushed By: outpaddling
Date: Wed Jan 20 10:00:53 2021 -0600
Changeset: b3081af098839adcf03e8da8e259ea7312cb0ec5
Modified Files:
Makefile
Removed Files:
fastqc/DESCR
fastqc/Makefile
fastqc/PLIST
fastqc/distinfo
Log Message:
Remove fastqc: Not likely to be upgraded soon
To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=b3081af098839adcf03e8da8e259ea7312cb0ec5
Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.
diffstat:
Makefile | 1 -
fastqc/DESCR | 5 --
fastqc/Makefile | 44 ----------
fastqc/PLIST | 246 --------------------------------------------------------
fastqc/distinfo | 6 --
5 files changed, 302 deletions(-)
diffs:
diff --git a/Makefile b/Makefile
index c4cd97f848..e2c7a9544d 100644
--- a/Makefile
+++ b/Makefile
@@ -796,7 +796,6 @@ SUBDIR+= fastbit
SUBDIR+= fastjet
SUBDIR+= fastool
SUBDIR+= fastp
-SUBDIR+= fastqc
SUBDIR+= fastrpc
SUBDIR+= fasttree
SUBDIR+= fastx-toolkit
diff --git a/fastqc/DESCR b/fastqc/DESCR
deleted file mode 100644
index 63c71afebd..0000000000
--- a/fastqc/DESCR
+++ /dev/null
@@ -1,5 +0,0 @@
-FastQC aims to provide a simple way to do some quality control checks on raw
-sequence data coming from high throughput sequencing pipelines. It provides a
-modular set of analyses which you can use to give a quick impression of whether
-your data has any problems of which you should be aware before doing any
-further analysis.
diff --git a/fastqc/Makefile b/fastqc/Makefile
deleted file mode 100644
index 3e4a11824f..0000000000
--- a/fastqc/Makefile
+++ /dev/null
@@ -1,44 +0,0 @@
-# $NetBSD$
-
-DISTNAME= fastqc_v${PKGVERSION_NOREV}
-PKGNAME= fastqc-0.11.9
-CATEGORIES= biology
-MASTER_SITES= https://www.bioinformatics.babraham.ac.uk/projects/fastqc/
-EXTRACT_SUFX= .zip
-
-MAINTAINER= bacon%NetBSD.org@localhost
-HOMEPAGE= https://www.bioinformatics.babraham.ac.uk/projects/fastqc/
-COMMENT= Quality control tool for high throughput sequence data
-LICENSE= gnu-gpl-v3
-
-SUBST_CLASSES+= javapath
-SUBST_STAGE.javapath= pre-configure
-SUBST_SED.javapath+= -e 's|$$RealBin$$delimiter|${DATADIR}$$delimiter${JAVAJARDIR}/fastqc$$delimiter|g'
-SUBST_SED.javapath+= -e 's|$$RealBin/|${JAVAJARDIR}/fastqc/|g'
-SUBST_FILES.javapath+= fastqc
-
-USE_TOOLS+= perl:run pax
-USE_JAVA= run
-USE_JAVA2= 8
-
-WRKSRC= ${WRKDIR}/FastQC
-REPLACE_PERL= fastqc
-NO_BUILD= yes
-
-DATADIR= ${PREFIX}/share/fastqc
-DOCSDIR= ${PREFIX}/share/doc/fastqc
-JAVAJARDIR= ${PREFIX}/share/java/classes
-
-INSTALLATION_DIRS= bin ${DATADIR} ${DOCSDIR} ${JAVAJARDIR}/fastqc
-
-do-install:
- ${INSTALL_DATA} ${WRKSRC}/*.jar ${DESTDIR}${JAVAJARDIR}/fastqc
- ${INSTALL_SCRIPT} ${WRKSRC}/fastqc ${DESTDIR}${PREFIX}/bin
- cd ${WRKSRC} && pax -rw Configuration ${DESTDIR}${DATADIR}
- cd ${WRKSRC} && pax -rw Templates ${DESTDIR}${DATADIR}
- cd ${WRKSRC} && pax -rw net ${DESTDIR}${JAVAJARDIR}/fastqc
- cd ${WRKSRC} && pax -rw org ${DESTDIR}${JAVAJARDIR}/fastqc
- cd ${WRKSRC} && pax -rw uk ${DESTDIR}${JAVAJARDIR}/fastqc
- cd ${WRKSRC} && pax -rw Help ${DESTDIR}${DOCSDIR}
-
-.include "../../mk/bsd.pkg.mk"
diff --git a/fastqc/PLIST b/fastqc/PLIST
deleted file mode 100644
index 75508fbe9d..0000000000
--- a/fastqc/PLIST
+++ /dev/null
@@ -1,246 +0,0 @@
-@comment $NetBSD$
-bin/fastqc
-share/doc/fastqc/Help/1 Introduction/.svn/entries
-share/doc/fastqc/Help/1 Introduction/.svn/text-base/1.1 What is FastQC.html.svn-base
-share/doc/fastqc/Help/1 Introduction/1.1 What is FastQC.html
-share/doc/fastqc/Help/2 Basic Operations/.svn/entries
-share/doc/fastqc/Help/2 Basic Operations/.svn/text-base/2.1 Opening a sequence file.html.svn-base
-share/doc/fastqc/Help/2 Basic Operations/.svn/text-base/2.2 Evaluating Results.html.svn-base
-share/doc/fastqc/Help/2 Basic Operations/.svn/text-base/2.3 Saving a Report.html.svn-base
-share/doc/fastqc/Help/2 Basic Operations/2.1 Opening a sequence file.html
-share/doc/fastqc/Help/2 Basic Operations/2.2 Evaluating Results.html
-share/doc/fastqc/Help/2 Basic Operations/2.3 Saving a Report.html
-share/doc/fastqc/Help/3 Analysis Modules/.svn/entries
-share/doc/fastqc/Help/3 Analysis Modules/.svn/prop-base/duplication_levels.png.svn-base
-share/doc/fastqc/Help/3 Analysis Modules/.svn/prop-base/kmer_profiles.png.svn-base
-share/doc/fastqc/Help/3 Analysis Modules/.svn/prop-base/per_base_gc_content.png.svn-base
-share/doc/fastqc/Help/3 Analysis Modules/.svn/prop-base/per_base_n_content.png.svn-base
-share/doc/fastqc/Help/3 Analysis Modules/.svn/prop-base/per_base_quality.png.svn-base
-share/doc/fastqc/Help/3 Analysis Modules/.svn/prop-base/per_base_sequence_content.png.svn-base
-share/doc/fastqc/Help/3 Analysis Modules/.svn/prop-base/per_sequence_gc_content.png.svn-base
-share/doc/fastqc/Help/3 Analysis Modules/.svn/prop-base/per_sequence_quality.png.svn-base
-share/doc/fastqc/Help/3 Analysis Modules/.svn/prop-base/per_tile_quality.png.svn-base
-share/doc/fastqc/Help/3 Analysis Modules/.svn/prop-base/sequence_length_distribution.png.svn-base
-share/doc/fastqc/Help/3 Analysis Modules/.svn/text-base/1 Basic Statistics.html.svn-base
-share/doc/fastqc/Help/3 Analysis Modules/.svn/text-base/10 Adapter Content.html.svn-base
-share/doc/fastqc/Help/3 Analysis Modules/.svn/text-base/11 Kmer Content.html.svn-base
-share/doc/fastqc/Help/3 Analysis Modules/.svn/text-base/12 Per Tile Sequence Quality.html.svn-base
-share/doc/fastqc/Help/3 Analysis Modules/.svn/text-base/2 Per Base Sequence Quality.html.svn-base
-share/doc/fastqc/Help/3 Analysis Modules/.svn/text-base/3 Per Sequence Quality Scores.html.svn-base
-share/doc/fastqc/Help/3 Analysis Modules/.svn/text-base/4 Per Base Sequence Content.html.svn-base
-share/doc/fastqc/Help/3 Analysis Modules/.svn/text-base/5 Per Sequence GC Content.html.svn-base
-share/doc/fastqc/Help/3 Analysis Modules/.svn/text-base/6 Per Base N Content.html.svn-base
-share/doc/fastqc/Help/3 Analysis Modules/.svn/text-base/7 Sequence Length Distribution.html.svn-base
-share/doc/fastqc/Help/3 Analysis Modules/.svn/text-base/8 Duplicate Sequences.html.svn-base
-share/doc/fastqc/Help/3 Analysis Modules/.svn/text-base/9 Overrepresented Sequences.html.svn-base
-share/doc/fastqc/Help/3 Analysis Modules/.svn/text-base/duplication_levels.png.svn-base
-share/doc/fastqc/Help/3 Analysis Modules/.svn/text-base/kmer_profiles.png.svn-base
-share/doc/fastqc/Help/3 Analysis Modules/.svn/text-base/per_base_gc_content.png.svn-base
-share/doc/fastqc/Help/3 Analysis Modules/.svn/text-base/per_base_n_content.png.svn-base
-share/doc/fastqc/Help/3 Analysis Modules/.svn/text-base/per_base_quality.png.svn-base
-share/doc/fastqc/Help/3 Analysis Modules/.svn/text-base/per_base_sequence_content.png.svn-base
-share/doc/fastqc/Help/3 Analysis Modules/.svn/text-base/per_sequence_gc_content.png.svn-base
-share/doc/fastqc/Help/3 Analysis Modules/.svn/text-base/per_sequence_quality.png.svn-base
-share/doc/fastqc/Help/3 Analysis Modules/.svn/text-base/per_tile_quality.png.svn-base
-share/doc/fastqc/Help/3 Analysis Modules/.svn/text-base/sequence_length_distribution.png.svn-base
-share/doc/fastqc/Help/3 Analysis Modules/1 Basic Statistics.html
-share/doc/fastqc/Help/3 Analysis Modules/10 Adapter Content.html
-share/doc/fastqc/Help/3 Analysis Modules/11 Kmer Content.html
-share/doc/fastqc/Help/3 Analysis Modules/12 Per Tile Sequence Quality.html
-share/doc/fastqc/Help/3 Analysis Modules/2 Per Base Sequence Quality.html
-share/doc/fastqc/Help/3 Analysis Modules/3 Per Sequence Quality Scores.html
-share/doc/fastqc/Help/3 Analysis Modules/4 Per Base Sequence Content.html
-share/doc/fastqc/Help/3 Analysis Modules/5 Per Sequence GC Content.html
-share/doc/fastqc/Help/3 Analysis Modules/6 Per Base N Content.html
-share/doc/fastqc/Help/3 Analysis Modules/7 Sequence Length Distribution.html
-share/doc/fastqc/Help/3 Analysis Modules/8 Duplicate Sequences.html
-share/doc/fastqc/Help/3 Analysis Modules/9 Overrepresented Sequences.html
-share/doc/fastqc/Help/3 Analysis Modules/duplication_levels.png
-share/doc/fastqc/Help/3 Analysis Modules/kmer_profiles.png
-share/doc/fastqc/Help/3 Analysis Modules/per_base_gc_content.png
-share/doc/fastqc/Help/3 Analysis Modules/per_base_n_content.png
-share/doc/fastqc/Help/3 Analysis Modules/per_base_quality.png
-share/doc/fastqc/Help/3 Analysis Modules/per_base_sequence_content.png
-share/doc/fastqc/Help/3 Analysis Modules/per_sequence_gc_content.png
-share/doc/fastqc/Help/3 Analysis Modules/per_sequence_quality.png
-share/doc/fastqc/Help/3 Analysis Modules/per_tile_quality.png
-share/doc/fastqc/Help/3 Analysis Modules/sequence_length_distribution.png
-share/fastqc/Configuration/adapter_list.txt
-share/fastqc/Configuration/contaminant_list.txt
-share/fastqc/Configuration/limits.txt
-share/fastqc/Templates/Icons/error.png
-share/fastqc/Templates/Icons/fastqc_icon.png
-share/fastqc/Templates/Icons/tick.png
-share/fastqc/Templates/Icons/warning.png
-share/fastqc/Templates/fastqc2fo.xsl
-share/fastqc/Templates/header_template.html
-share/java/classes/fastqc/cisd-jhdf5.jar
-share/java/classes/fastqc/jbzip2-0.9.jar
-share/java/classes/fastqc/net/sourceforge/iharder/base64/Base64$1.class
-share/java/classes/fastqc/net/sourceforge/iharder/base64/Base64$InputStream.class
-share/java/classes/fastqc/net/sourceforge/iharder/base64/Base64$OutputStream.class
-share/java/classes/fastqc/net/sourceforge/iharder/base64/Base64.class
-share/java/classes/fastqc/org/apache/commons/math3/analysis/UnivariateFunction.class
-share/java/classes/fastqc/org/apache/commons/math3/analysis/solvers/AbstractUnivariateSolver.class
-share/java/classes/fastqc/org/apache/commons/math3/analysis/solvers/AllowedSolution.class
-share/java/classes/fastqc/org/apache/commons/math3/analysis/solvers/BaseAbstractUnivariateSolver.class
-share/java/classes/fastqc/org/apache/commons/math3/analysis/solvers/BaseUnivariateSolver.class
-share/java/classes/fastqc/org/apache/commons/math3/analysis/solvers/BracketedUnivariateSolver.class
-share/java/classes/fastqc/org/apache/commons/math3/analysis/solvers/BrentSolver.class
-share/java/classes/fastqc/org/apache/commons/math3/analysis/solvers/UnivariateSolver.class
-share/java/classes/fastqc/org/apache/commons/math3/analysis/solvers/UnivariateSolverUtils.class
-share/java/classes/fastqc/org/apache/commons/math3/distribution/AbstractIntegerDistribution.class
-share/java/classes/fastqc/org/apache/commons/math3/distribution/AbstractRealDistribution$1.class
-share/java/classes/fastqc/org/apache/commons/math3/distribution/AbstractRealDistribution.class
-share/java/classes/fastqc/org/apache/commons/math3/distribution/BetaDistribution.class
-share/java/classes/fastqc/org/apache/commons/math3/distribution/BinomialDistribution.class
-share/java/classes/fastqc/org/apache/commons/math3/distribution/CauchyDistribution.class
-share/java/classes/fastqc/org/apache/commons/math3/distribution/ChiSquaredDistribution.class
-share/java/classes/fastqc/org/apache/commons/math3/distribution/FDistribution.class
-share/java/classes/fastqc/org/apache/commons/math3/distribution/GammaDistribution.class
-share/java/classes/fastqc/org/apache/commons/math3/distribution/HypergeometricDistribution.class
-share/java/classes/fastqc/org/apache/commons/math3/distribution/IntegerDistribution.class
-share/java/classes/fastqc/org/apache/commons/math3/distribution/NormalDistribution.class
-share/java/classes/fastqc/org/apache/commons/math3/distribution/PascalDistribution.class
-share/java/classes/fastqc/org/apache/commons/math3/distribution/PoissonDistribution.class
-share/java/classes/fastqc/org/apache/commons/math3/distribution/RealDistribution.class
-share/java/classes/fastqc/org/apache/commons/math3/distribution/SaddlePointExpansion.class
-share/java/classes/fastqc/org/apache/commons/math3/distribution/TDistribution.class
-share/java/classes/fastqc/org/apache/commons/math3/distribution/WeibullDistribution.class
-share/java/classes/fastqc/org/apache/commons/math3/distribution/ZipfDistribution.class
-share/java/classes/fastqc/org/apache/commons/math3/exception/ConvergenceException.class
-share/java/classes/fastqc/org/apache/commons/math3/exception/DimensionMismatchException.class
-share/java/classes/fastqc/org/apache/commons/math3/exception/MathArithmeticException.class
-share/java/classes/fastqc/org/apache/commons/math3/exception/MathIllegalArgumentException.class
-share/java/classes/fastqc/org/apache/commons/math3/exception/MathIllegalNumberException.class
-share/java/classes/fastqc/org/apache/commons/math3/exception/MathIllegalStateException.class
-share/java/classes/fastqc/org/apache/commons/math3/exception/MathInternalError.class
-share/java/classes/fastqc/org/apache/commons/math3/exception/MaxCountExceededException.class
-share/java/classes/fastqc/org/apache/commons/math3/exception/NoBracketingException.class
-share/java/classes/fastqc/org/apache/commons/math3/exception/NotFiniteNumberException.class
-share/java/classes/fastqc/org/apache/commons/math3/exception/NotPositiveException.class
-share/java/classes/fastqc/org/apache/commons/math3/exception/NotStrictlyPositiveException.class
-share/java/classes/fastqc/org/apache/commons/math3/exception/NullArgumentException.class
-share/java/classes/fastqc/org/apache/commons/math3/exception/NumberIsTooLargeException.class
-share/java/classes/fastqc/org/apache/commons/math3/exception/NumberIsTooSmallException.class
-share/java/classes/fastqc/org/apache/commons/math3/exception/OutOfRangeException.class
-share/java/classes/fastqc/org/apache/commons/math3/exception/TooManyEvaluationsException.class
-share/java/classes/fastqc/org/apache/commons/math3/exception/util/ArgUtils.class
-share/java/classes/fastqc/org/apache/commons/math3/exception/util/ExceptionContext.class
-share/java/classes/fastqc/org/apache/commons/math3/exception/util/ExceptionContextProvider.class
-share/java/classes/fastqc/org/apache/commons/math3/exception/util/Localizable.class
-share/java/classes/fastqc/org/apache/commons/math3/exception/util/LocalizedFormats.class
-share/java/classes/fastqc/org/apache/commons/math3/random/AbstractWell.class
-share/java/classes/fastqc/org/apache/commons/math3/random/BitsStreamGenerator.class
-share/java/classes/fastqc/org/apache/commons/math3/random/RandomData.class
-share/java/classes/fastqc/org/apache/commons/math3/random/RandomDataImpl.class
-share/java/classes/fastqc/org/apache/commons/math3/random/RandomGenerator.class
-share/java/classes/fastqc/org/apache/commons/math3/random/Well19937c.class
-share/java/classes/fastqc/org/apache/commons/math3/special/Beta$1.class
-share/java/classes/fastqc/org/apache/commons/math3/special/Beta.class
-share/java/classes/fastqc/org/apache/commons/math3/special/Erf.class
-share/java/classes/fastqc/org/apache/commons/math3/special/Gamma$1.class
-share/java/classes/fastqc/org/apache/commons/math3/special/Gamma.class
-share/java/classes/fastqc/org/apache/commons/math3/util/ArithmeticUtils.class
-share/java/classes/fastqc/org/apache/commons/math3/util/ContinuedFraction.class
-share/java/classes/fastqc/org/apache/commons/math3/util/DoubleArray.class
-share/java/classes/fastqc/org/apache/commons/math3/util/FastMath$ExpFracTable.class
-share/java/classes/fastqc/org/apache/commons/math3/util/FastMath$ExpIntTable.class
-share/java/classes/fastqc/org/apache/commons/math3/util/FastMath$lnMant.class
-share/java/classes/fastqc/org/apache/commons/math3/util/FastMath.class
-share/java/classes/fastqc/org/apache/commons/math3/util/FastMathCalc.class
-share/java/classes/fastqc/org/apache/commons/math3/util/FastMathLiteralArrays.class
-share/java/classes/fastqc/org/apache/commons/math3/util/Incrementor$1.class
-share/java/classes/fastqc/org/apache/commons/math3/util/Incrementor$MaxCountExceededCallback.class
-share/java/classes/fastqc/org/apache/commons/math3/util/Incrementor.class
-share/java/classes/fastqc/org/apache/commons/math3/util/MathUtils.class
-share/java/classes/fastqc/org/apache/commons/math3/util/Precision.class
-share/java/classes/fastqc/org/apache/commons/math3/util/ResizableDoubleArray.class
-share/java/classes/fastqc/sam-1.103.jar
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Analysis/AnalysisListener.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Analysis/AnalysisQueue.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Analysis/AnalysisRunner.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Analysis/OfflineRunner.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Dialogs/AboutDialog$1.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Dialogs/AboutDialog.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Dialogs/FastQCTitlePanel$SmoothJLabel.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Dialogs/FastQCTitlePanel.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Dialogs/WelcomePanel.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/FastQCApplication$1.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/FastQCApplication.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/FastQCConfig.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/FastQCMenuBar.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/FileFilters/BAMFileFilter.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/FileFilters/CasavaFastQFileFilter.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/FileFilters/FastQFileFilter.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/FileFilters/GobyFileFilter.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/FileFilters/MappedBAMFileFilter.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/FileFilters/SequenceFileFilter.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Graphs/BaseGroup.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Graphs/LineGraph.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Graphs/QualityBoxPlot.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Graphs/TileGraph.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Help/HelpDialog.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Help/HelpIndexRoot$FileSorter.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Help/HelpIndexRoot.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Help/HelpPage.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Help/HelpPageDisplay$HelpEditor.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Help/HelpPageDisplay.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Help/HelpSearchPanel.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Modules/AbstractQCModule.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Modules/AdapterContent$Adapter.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Modules/AdapterContent$ResultsTable.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Modules/AdapterContent.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Modules/BasicStats$ResultsTable.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Modules/BasicStats.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Modules/DuplicationLevel.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Modules/GCModel/GCModel.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Modules/GCModel/GCModelValue.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Modules/KmerContent$Kmer.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Modules/KmerContent$ResultsTable.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Modules/KmerContent.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Modules/ModuleConfig.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Modules/ModuleFactory.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Modules/NContent.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Modules/OverRepresentedSeqs$OverrepresentedSeq.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Modules/OverRepresentedSeqs$ResultsTable.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Modules/OverRepresentedSeqs.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Modules/PerBaseQualityScores.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Modules/PerBaseSequenceContent.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Modules/PerSequenceGCContent.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Modules/PerSequenceQualityScores.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Modules/PerTileQualityScores.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Modules/QCModule.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Modules/SequenceLengthDistribution.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Report/HTMLReportArchive.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Report/stylesheet.txt
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Resources/error.png
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Resources/fastqc_icon.png
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Resources/fastqc_icon.svg
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Resources/fastqc_icon_100.png
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Resources/tick.png
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Resources/warning.png
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Results/ResultsPanel$ModuleRenderer.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Results/ResultsPanel.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Sequence/BAMFile.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Sequence/Contaminant/Contaminant.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Sequence/Contaminant/ContaminantHit.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Sequence/Contaminant/ContaminentFinder.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Sequence/Fast5File.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Sequence/FastQFile.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Sequence/QualityEncoding/PhredEncoding.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Sequence/Sequence.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Sequence/SequenceFactory.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Sequence/SequenceFile.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Sequence/SequenceFileGroup.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Sequence/SequenceFormatException.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Statistics/NormalDistribution.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Statistics/PearsonCorrelation.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Utilities/CasavaBasename.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Utilities/HotColdColourGradient.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Utilities/ImageToBase64.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Utilities/MultiMemberGZIPInputStream.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Utilities/NameFormatException.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Utilities/NanoporeBasename.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Utilities/QualityCount.class
-share/java/classes/fastqc/uk/ac/babraham/FastQC/Utilities/RGB.class
diff --git a/fastqc/distinfo b/fastqc/distinfo
deleted file mode 100644
index b2d8133dda..0000000000
--- a/fastqc/distinfo
+++ /dev/null
@@ -1,6 +0,0 @@
-$NetBSD$
-
-SHA1 (fastqc_v0.11.9.zip) = 077003dcef8933c4b43ac5b6945fdc31b53f746c
-RMD160 (fastqc_v0.11.9.zip) = 9c06aff0044e0f8b4866ae9c731543017e71b9e0
-SHA512 (fastqc_v0.11.9.zip) = f9ed1546d08e941abcca8ff507d2cf2d455831fcb3d36def7d9881f4f23c4d7874b62d28c5f9901149e1b5bc7ca5fe746c5a522785b7fe72bc9e96330b568bed
-Size (fastqc_v0.11.9.zip) = 10249221 bytes
Home |
Main Index |
Thread Index |
Old Index