pkgsrc-WIP-changes archive
[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index][Old Index]
bedtools: Remove SUBST changes from static patch
Module Name: pkgsrc-wip
Committed By: Jason Bacon <bacon%NetBSD.org@localhost>
Pushed By: outpaddling
Date: Fri Feb 5 15:49:18 2021 -0600
Changeset: 42a0c990f897c829784699150fe87cb358715b8a
Modified Files:
bedtools/distinfo
bedtools/patches/patch-Makefile
Log Message:
bedtools: Remove SUBST changes from static patch
To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=42a0c990f897c829784699150fe87cb358715b8a
Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.
diffstat:
bedtools/distinfo | 2 +-
bedtools/patches/patch-Makefile | 11 +----------
2 files changed, 2 insertions(+), 11 deletions(-)
diffs:
diff --git a/bedtools/distinfo b/bedtools/distinfo
index 2711eaa0fa..fa9168f1b4 100644
--- a/bedtools/distinfo
+++ b/bedtools/distinfo
@@ -4,6 +4,6 @@ SHA1 (bedtools-2.30.0.tar.gz) = b3bae21434f261818e15875727b4a3c5c7366bc7
RMD160 (bedtools-2.30.0.tar.gz) = 1cc30e5bc3df12f38d8f1e055ff2f939d7608395
SHA512 (bedtools-2.30.0.tar.gz) = 3d69d6a53d3e5d15597dfefa26f7895231adbf3c1fe3b16ee4213e497ef01a20698add2f0e6f03d8eb7cd7c70709955f0ebdf897a025a83d31ef17e2c91f9856
Size (bedtools-2.30.0.tar.gz) = 20639858 bytes
-SHA1 (patch-Makefile) = 0cbebf2830ec526b390f05baa54baee7f54d73c5
+SHA1 (patch-Makefile) = d21b4a69ce18eac7de59d277a03d0a5f5e2e1cb5
SHA1 (patch-src_utils_BamTools_include_SamHeader.hpp) = 7ab168b247b5edf7f3eccd9ef7329a5e1605c787
SHA1 (patch-src_utils_htslib_Makefile) = 8785ff3110f8df26e0cc5b2fdf1e2e02d6cdc836
diff --git a/bedtools/patches/patch-Makefile b/bedtools/patches/patch-Makefile
index ac23131a6c..94e3872989 100644
--- a/bedtools/patches/patch-Makefile
+++ b/bedtools/patches/patch-Makefile
@@ -2,7 +2,7 @@ $NetBSD$
# Respect pkgsrc env, drop bash dep
---- Makefile.orig 2021-01-23 19:33:26.000000000 +0000
+--- Makefile.orig 2021-02-05 21:42:03.926301547 +0000
+++ Makefile
@@ -4,7 +4,7 @@
# (c) 2009 Aaron Quinlan
@@ -40,15 +40,6 @@ $NetBSD$
.PRECIOUS: $(OBJ_DIR)/%.d
-include $(patsubst %.o,%.d,$(BUILT_OBJECTS))
-@@ -189,7 +189,7 @@ test/htsutil: $(OBJ_DIR)/htsutil.o $(HTS
-
- $(BIN_DIR)/intersectBed: | $(BIN_DIR)
- @echo "- Creating executables for old CLI."
-- @python scripts/makeBashScripts.py
-+ @/Users/bacon/Pkgsrc/pkg/bin//Users/bacon/Pkgsrc/pkg/bin/python3.83.8 scripts/makeBashScripts.py
- @chmod +x bin/*
- @echo "done."
-
@@ -197,9 +197,9 @@ $(BIN_DIR)/intersectBed: | $(BIN_DIR)
.PHONY: all
Home |
Main Index |
Thread Index |
Old Index