samtools: Fix 1.11 build and update plist

[Jason W Bacon <bacon%NetBSD.org@localhost>]

Module Name:	pkgsrc-wip
Committed By:	Jason W Bacon <bacon%NetBSD.org@localhost>
Pushed By:	outpaddling
Date:		Sat Feb 6 13:38:20 2021 -0600
Changeset:	c7498fe55fd77591899a5c4e2a42d882e0bc24ae

Modified Files:
	samtools/Makefile
	samtools/PLIST

Log Message:
samtools: Fix 1.11 build and update plist

To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=c7498fe55fd77591899a5c4e2a42d882e0bc24ae

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

diffstat:
 samtools/Makefile | 2 +-
 samtools/PLIST    | 4 ++++
 2 files changed, 5 insertions(+), 1 deletion(-)

diffs:
diff --git a/samtools/Makefile b/samtools/Makefile
index 014e952fea..4630d5e1bd 100644
--- a/samtools/Makefile
+++ b/samtools/Makefile
@@ -25,7 +25,7 @@ SUBST_FILES.bash+=	test/test.pl
 
 REPLACE_PERL+=		misc/*.pl
 REPLACE_PERL+=		test/*.pl
-REPLACE_PERL+=		misc/plot-bamstats
+REPLACE_PERL+=		misc/plot-bamstats misc/plot-ampliconstats
 REPLACE_LUA+=		misc/*.lua
 
 CONFIGURE_ARGS+=	--with-htslib=system
diff --git a/samtools/PLIST b/samtools/PLIST
index 31dfd1eeaf..9945ad2fc2 100644
--- a/samtools/PLIST
+++ b/samtools/PLIST
@@ -9,6 +9,7 @@ bin/maq2sam-short
 bin/md5fa
 bin/md5sum-lite
 bin/novo2sam.pl
+bin/plot-ampliconstats
 bin/plot-bamstats
 bin/psl2sam.pl
 bin/sam2vcf.pl
@@ -20,10 +21,13 @@ bin/wgsim
 bin/wgsim_eval.pl
 bin/zoom2sam.pl
 man/man1/samtools-addreplacerg.1
+man/man1/samtools-ampliconclip.1
+man/man1/samtools-ampliconstats.1
 man/man1/samtools-bedcov.1
 man/man1/samtools-calmd.1
 man/man1/samtools-cat.1
 man/man1/samtools-collate.1
+man/man1/samtools-coverage.1
 man/man1/samtools-depad.1
 man/man1/samtools-depth.1
 man/man1/samtools-dict.1