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biolibc: Update to 0.1.3.67
Module Name: pkgsrc-wip
Committed By: Jason Bacon <bacon%NetBSD.org@localhost>
Pushed By: outpaddling
Date: Wed Jul 28 13:44:23 2021 -0500
Changeset: 4dfd1216e1ab92c43ffbf53bc24da829a9239153
Modified Files:
biolibc/Makefile
biolibc/PLIST
biolibc/buildlink3.mk
biolibc/distinfo
Log Message:
biolibc: Update to 0.1.3.67
Add FASTQ class, based on FASTA
To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=4dfd1216e1ab92c43ffbf53bc24da829a9239153
Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.
diffstat:
biolibc/Makefile | 4 ++--
biolibc/PLIST | 57 +++++++++++++++++++++++++++++++++++++++++++++++++++
biolibc/buildlink3.mk | 2 +-
biolibc/distinfo | 8 ++++----
4 files changed, 64 insertions(+), 7 deletions(-)
diffs:
diff --git a/biolibc/Makefile b/biolibc/Makefile
index 87a040efdf..e41080f5c3 100644
--- a/biolibc/Makefile
+++ b/biolibc/Makefile
@@ -1,9 +1,9 @@
# $NetBSD$
-DISTNAME= biolibc-0.1.3.66
+DISTNAME= biolibc-0.1.3.67
CATEGORIES= biology
MASTER_SITES= ${MASTER_SITE_GITHUB:=auerlab/}
-GITHUB_TAG= da6ef496cdaea5027723120828659dab09979941
+GITHUB_TAG= 9945c3009b0dee8786a1cd43ecbc85240a65b6b5
MAINTAINER= bacon%NetBSD.org@localhost
HOMEPAGE= https://github.com/auerlab/biolibc
diff --git a/biolibc/PLIST b/biolibc/PLIST
index 9c474e6ec8..6c0f4d9658 100644
--- a/biolibc/PLIST
+++ b/biolibc/PLIST
@@ -3,6 +3,7 @@ include/biolibc/bed.h
include/biolibc/biolibc.h
include/biolibc/biostring.h
include/biolibc/fasta.h
+include/biolibc/fastq.h
include/biolibc/gff.h
include/biolibc/overlap.h
include/biolibc/pos-list.h
@@ -72,6 +73,42 @@ ${PLIST.cs}man/man3/BL_FASTA_SET_SEQ_AE.3
${PLIST.cs}man/man3/BL_FASTA_SET_SEQ_ARRAY_SIZE.3
${PLIST.cs}man/man3/BL_FASTA_SET_SEQ_CPY.3
${PLIST.cs}man/man3/BL_FASTA_SET_SEQ_LEN.3
+${PLIST.cs}man/man3/BL_FASTQ_DESC.3
+${PLIST.cs}man/man3/BL_FASTQ_DESC_AE.3
+${PLIST.cs}man/man3/BL_FASTQ_DESC_ARRAY_SIZE.3
+${PLIST.cs}man/man3/BL_FASTQ_DESC_LEN.3
+${PLIST.cs}man/man3/BL_FASTQ_PLUS.3
+${PLIST.cs}man/man3/BL_FASTQ_PLUS_AE.3
+${PLIST.cs}man/man3/BL_FASTQ_PLUS_ARRAY_SIZE.3
+${PLIST.cs}man/man3/BL_FASTQ_PLUS_LEN.3
+${PLIST.cs}man/man3/BL_FASTQ_QUAL.3
+${PLIST.cs}man/man3/BL_FASTQ_QUAL_AE.3
+${PLIST.cs}man/man3/BL_FASTQ_QUAL_ARRAY_SIZE.3
+${PLIST.cs}man/man3/BL_FASTQ_QUAL_LEN.3
+${PLIST.cs}man/man3/BL_FASTQ_SEQ.3
+${PLIST.cs}man/man3/BL_FASTQ_SEQ_AE.3
+${PLIST.cs}man/man3/BL_FASTQ_SEQ_ARRAY_SIZE.3
+${PLIST.cs}man/man3/BL_FASTQ_SEQ_LEN.3
+${PLIST.cs}man/man3/BL_FASTQ_SET_DESC.3
+${PLIST.cs}man/man3/BL_FASTQ_SET_DESC_AE.3
+${PLIST.cs}man/man3/BL_FASTQ_SET_DESC_ARRAY_SIZE.3
+${PLIST.cs}man/man3/BL_FASTQ_SET_DESC_CPY.3
+${PLIST.cs}man/man3/BL_FASTQ_SET_DESC_LEN.3
+${PLIST.cs}man/man3/BL_FASTQ_SET_PLUS.3
+${PLIST.cs}man/man3/BL_FASTQ_SET_PLUS_AE.3
+${PLIST.cs}man/man3/BL_FASTQ_SET_PLUS_ARRAY_SIZE.3
+${PLIST.cs}man/man3/BL_FASTQ_SET_PLUS_CPY.3
+${PLIST.cs}man/man3/BL_FASTQ_SET_PLUS_LEN.3
+${PLIST.cs}man/man3/BL_FASTQ_SET_QUAL.3
+${PLIST.cs}man/man3/BL_FASTQ_SET_QUAL_AE.3
+${PLIST.cs}man/man3/BL_FASTQ_SET_QUAL_ARRAY_SIZE.3
+${PLIST.cs}man/man3/BL_FASTQ_SET_QUAL_CPY.3
+${PLIST.cs}man/man3/BL_FASTQ_SET_QUAL_LEN.3
+${PLIST.cs}man/man3/BL_FASTQ_SET_SEQ.3
+${PLIST.cs}man/man3/BL_FASTQ_SET_SEQ_AE.3
+${PLIST.cs}man/man3/BL_FASTQ_SET_SEQ_ARRAY_SIZE.3
+${PLIST.cs}man/man3/BL_FASTQ_SET_SEQ_CPY.3
+${PLIST.cs}man/man3/BL_FASTQ_SET_SEQ_LEN.3
${PLIST.cs}man/man3/BL_GFF_ATTRIBUTES.3
${PLIST.cs}man/man3/BL_GFF_ATTRIBUTES_AE.3
${PLIST.cs}man/man3/BL_GFF_END.3
@@ -337,6 +374,26 @@ man/man3/bl_fasta_set_seq_array_size.3
man/man3/bl_fasta_set_seq_cpy.3
man/man3/bl_fasta_set_seq_len.3
man/man3/bl_fasta_write.3
+man/man3/bl_fastq_set_desc.3
+man/man3/bl_fastq_set_desc_ae.3
+man/man3/bl_fastq_set_desc_array_size.3
+man/man3/bl_fastq_set_desc_cpy.3
+man/man3/bl_fastq_set_desc_len.3
+man/man3/bl_fastq_set_plus.3
+man/man3/bl_fastq_set_plus_ae.3
+man/man3/bl_fastq_set_plus_array_size.3
+man/man3/bl_fastq_set_plus_cpy.3
+man/man3/bl_fastq_set_plus_len.3
+man/man3/bl_fastq_set_qual.3
+man/man3/bl_fastq_set_qual_ae.3
+man/man3/bl_fastq_set_qual_array_size.3
+man/man3/bl_fastq_set_qual_cpy.3
+man/man3/bl_fastq_set_qual_len.3
+man/man3/bl_fastq_set_seq.3
+man/man3/bl_fastq_set_seq_ae.3
+man/man3/bl_fastq_set_seq_array_size.3
+man/man3/bl_fastq_set_seq_cpy.3
+man/man3/bl_fastq_set_seq_len.3
man/man3/bl_gff_read.3
man/man3/bl_gff_set_attributes.3
man/man3/bl_gff_set_attributes_ae.3
diff --git a/biolibc/buildlink3.mk b/biolibc/buildlink3.mk
index d8d0c2139a..dd19dc5754 100644
--- a/biolibc/buildlink3.mk
+++ b/biolibc/buildlink3.mk
@@ -5,7 +5,7 @@ BUILDLINK_TREE+= biolibc
.if !defined(BIOLIBC_BUILDLINK3_MK)
BIOLIBC_BUILDLINK3_MK:=
-BUILDLINK_API_DEPENDS.biolibc+= biolibc>=0.1.3.64
+BUILDLINK_API_DEPENDS.biolibc+= biolibc>=0.1.3.67
BUILDLINK_PKGSRCDIR.biolibc?= ../../wip/biolibc
.endif # BIOLIBC_BUILDLINK3_MK
diff --git a/biolibc/distinfo b/biolibc/distinfo
index 58f945fbc4..1d3328fd1b 100644
--- a/biolibc/distinfo
+++ b/biolibc/distinfo
@@ -1,6 +1,6 @@
$NetBSD$
-SHA1 (biolibc-0.1.3.66-da6ef496cdaea5027723120828659dab09979941.tar.gz) = 9dfd8a60586e9f5933a4d675699a393b10a81423
-RMD160 (biolibc-0.1.3.66-da6ef496cdaea5027723120828659dab09979941.tar.gz) = 00bff6ea0e172630b8f20ebf3b10e305972a8bf0
-SHA512 (biolibc-0.1.3.66-da6ef496cdaea5027723120828659dab09979941.tar.gz) = 74a84757f250cf2db62cd88caa2bdd6d95968644d905234b74c5a51ab35d9a04990671f0624730532732ef099193626c627966145ea4c3637138905bee27a0c3
-Size (biolibc-0.1.3.66-da6ef496cdaea5027723120828659dab09979941.tar.gz) = 102009 bytes
+SHA1 (biolibc-0.1.3.67-9945c3009b0dee8786a1cd43ecbc85240a65b6b5.tar.gz) = 3adbeb443d1a8aa8ed32cc9316c943bf1a346410
+RMD160 (biolibc-0.1.3.67-9945c3009b0dee8786a1cd43ecbc85240a65b6b5.tar.gz) = bb3f4f5355a38ffb978ae8b6adbceed2cf902fd4
+SHA512 (biolibc-0.1.3.67-9945c3009b0dee8786a1cd43ecbc85240a65b6b5.tar.gz) = f546c01673a8ca528c2968b2f7878fb5d173d7ed57e7ca4d9789ec7530d36c8c8937d8a37e074a05c0cae98908c15c8d326f8bcf5fe57bd18d6ed9372b2e8e74
+Size (biolibc-0.1.3.67-9945c3009b0dee8786a1cd43ecbc85240a65b6b5.tar.gz) = 111156 bytes
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