cdhit: Update to 4.8.1 and clean up Makefile

[Jason Bacon <bacon%NetBSD.org@localhost>]

Module Name:	pkgsrc-wip
Committed By:	Jason Bacon <bacon%NetBSD.org@localhost>
Pushed By:	outpaddling
Date:		Fri Dec 17 09:32:48 2021 -0600
Changeset:	5348e53bbf162505a4f0fb72f69a292a818c7faa

Modified Files:
	cdhit/Makefile
	cdhit/PLIST
	cdhit/distinfo

Log Message:
cdhit: Update to 4.8.1 and clean up Makefile

To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=5348e53bbf162505a4f0fb72f69a292a818c7faa

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

diffstat:
 cdhit/Makefile | 8 ++++----
 cdhit/PLIST    | 1 +
 cdhit/distinfo | 6 +++---
 3 files changed, 8 insertions(+), 7 deletions(-)

diffs:
diff --git a/cdhit/Makefile b/cdhit/Makefile
index d2e1844063..09a030fe14 100644
--- a/cdhit/Makefile
+++ b/cdhit/Makefile
@@ -4,7 +4,7 @@
 #               Generated by fbsd2pkg                     #
 ###########################################################
 
-DISTNAME=	cdhit-4.6.8
+DISTNAME=	cdhit-4.8.1
 CATEGORIES=	biology
 MASTER_SITES=	${MASTER_SITE_GITHUB:=weizhongli/}
 GITHUB_TAG=	V${PKGVERSION_NOREV}
@@ -22,13 +22,13 @@ REPLACE_PERL=	*.pl
 WRKSRC=		${WRKDIR}/${DISTNAME}
 
 SUBST_CLASSES+=		compiler
-SUBST_STAGE.compiler=	post-patch
+SUBST_STAGE.compiler=	pre-configure
 SUBST_MESSAGE.compiler=	Fixing hardcoded compiler name
 SUBST_FILES.compiler=	${MAKE_FILE}
-SUBST_SED.compiler=	-e 's|g++|${CXX:Q}|g'
+SUBST_SED.compiler=	-e 's|g++|'${CXX:Q}'|g'
 
 SUBST_CLASSES+=		bash
-SUBST_STAGE.bash=	post-patch
+SUBST_STAGE.bash=	pre-configure
 SUBST_MESSAGE.bash=	Fixing bash path
 SUBST_FILES.bash=	cd-hit-2d-para.pl cd-hit-para.pl
 SUBST_SED.bash=		-e 's|/bin/bash|${PREFIX}/bin/bash|g'
diff --git a/cdhit/PLIST b/cdhit/PLIST
index db374c4071..17b6ee6c09 100644
--- a/cdhit/PLIST
+++ b/cdhit/PLIST
@@ -4,6 +4,7 @@ bin/cd-hit
 bin/cd-hit-2d
 bin/cd-hit-2d-para.pl
 bin/cd-hit-454
+bin/cd-hit-clstr_2_blm8.pl
 bin/cd-hit-div
 bin/cd-hit-div.pl
 bin/cd-hit-est
diff --git a/cdhit/distinfo b/cdhit/distinfo
index e6ddd4860a..1f8259c09c 100644
--- a/cdhit/distinfo
+++ b/cdhit/distinfo
@@ -1,5 +1,5 @@
 $NetBSD$
 
-RMD160 (cdhit-4.6.8.tar.gz) = 3519fd8e6551762eaafeaa9d699acd47e9972b3f
-SHA512 (cdhit-4.6.8.tar.gz) = 6f25780557ea119d12db301d16038fc2b5740f33953dae40216392574bd8bdd93c69c10ecb46a9159070e701d9f743e02cf46d80557faa6d407aec6d08f6e10c
-Size (cdhit-4.6.8.tar.gz) = 932535 bytes
+BLAKE2s (cdhit-4.8.1.tar.gz) = 3660fc912a66ed9ce75ea07c913271e3a63b8e4050a2c26e9a99ba4e4ff919be
+SHA512 (cdhit-4.8.1.tar.gz) = 28f350c67079f000b4102126a29d2eed110c636fb32a8a53699b60e6f3447348ea3838fe87a4dd952895d62491298394a314254e91036f6a23b1956b1e237a64
+Size (cdhit-4.8.1.tar.gz) = 945639 bytes