biolibc: Update to 0.2.1.7

[Jason Bacon <bacon%NetBSD.org@localhost>]

Module Name:	pkgsrc-wip
Committed By:	Jason Bacon <bacon%NetBSD.org@localhost>
Pushed By:	outpaddling
Date:		Sun Jan 9 09:28:43 2022 -0600
Changeset:	53e50d0b1d0d059c840f9a35a3af5783d5d44269

Modified Files:
	biolibc/Makefile
	biolibc/PLIST
	biolibc/buildlink3.mk
	biolibc/distinfo

Log Message:
biolibc: Update to 0.2.1.7

Import FASTQ trimming functions from fastq-trim
Standardize more function interfaces (object pointer is always first arg)

To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=53e50d0b1d0d059c840f9a35a3af5783d5d44269

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

diffstat:
 biolibc/Makefile      | 4 ++--
 biolibc/PLIST         | 5 +++++
 biolibc/buildlink3.mk | 2 +-
 biolibc/distinfo      | 6 +++---
 4 files changed, 11 insertions(+), 6 deletions(-)

diffs:
diff --git a/biolibc/Makefile b/biolibc/Makefile
index f43258280b..96de760b5e 100644
--- a/biolibc/Makefile
+++ b/biolibc/Makefile
@@ -1,9 +1,9 @@
 # $NetBSD$
 
-DISTNAME=	biolibc-0.2.1.5
+DISTNAME=	biolibc-0.2.1.7
 CATEGORIES=	biology
 MASTER_SITES=	${MASTER_SITE_GITHUB:=auerlab/}
-GITHUB_TAG=	778707dc2a0f0be1a0a82857488be15accff69b7
+GITHUB_TAG=	8197c7c4825f1e6f68bc6a9e79edfdeec464f757
 
 MAINTAINER=	bacon%NetBSD.org@localhost
 HOMEPAGE=	https://github.com/auerlab/biolibc
diff --git a/biolibc/PLIST b/biolibc/PLIST
index 6c7d7826f0..e4da818d02 100644
--- a/biolibc/PLIST
+++ b/biolibc/PLIST
@@ -200,8 +200,13 @@ man/man3/bl_fasta_set_seq_array_size.3
 man/man3/bl_fasta_set_seq_cpy.3
 man/man3/bl_fasta_set_seq_len.3
 man/man3/bl_fasta_write.3
+man/man3/bl_fastq_3p_trim.3
+man/man3/bl_fastq_find_3p_low_qual.3
+man/man3/bl_fastq_find_adapter_exact.3
+man/man3/bl_fastq_find_adapter_smart.3
 man/man3/bl_fastq_free.3
 man/man3/bl_fastq_init.3
+man/man3/bl_fastq_name_cmp.3
 man/man3/bl_fastq_read.3
 man/man3/bl_fastq_set_desc.3
 man/man3/bl_fastq_set_desc_ae.3
diff --git a/biolibc/buildlink3.mk b/biolibc/buildlink3.mk
index 73929c631d..1feda7d9f8 100644
--- a/biolibc/buildlink3.mk
+++ b/biolibc/buildlink3.mk
@@ -5,7 +5,7 @@ BUILDLINK_TREE+=	biolibc
 .if !defined(BIOLIBC_BUILDLINK3_MK)
 BIOLIBC_BUILDLINK3_MK:=
 
-BUILDLINK_API_DEPENDS.biolibc+=	biolibc>=0.2.1.4
+BUILDLINK_API_DEPENDS.biolibc+=	biolibc>=0.2.1.7
 BUILDLINK_PKGSRCDIR.biolibc?=	../../wip/biolibc
 
 .include "../../wip/libxtend/buildlink3.mk"
diff --git a/biolibc/distinfo b/biolibc/distinfo
index 28cd4bd2cc..3868a648e3 100644
--- a/biolibc/distinfo
+++ b/biolibc/distinfo
@@ -1,5 +1,5 @@
 $NetBSD$
 
-BLAKE2s (biolibc-0.2.1.5-778707dc2a0f0be1a0a82857488be15accff69b7.tar.gz) = df22f2c9fa598ffb1ec1c81b1231df892538fbe07273e7d0809ae9deb1489837
-SHA512 (biolibc-0.2.1.5-778707dc2a0f0be1a0a82857488be15accff69b7.tar.gz) = 8d2370e9490f1414a0d05fe36cd6325cba60da131eb48f98cb902f01234b337edd72bc74146a8dd73878f324395cd2f6b580173a0353311e3757ebcf63aa8192
-Size (biolibc-0.2.1.5-778707dc2a0f0be1a0a82857488be15accff69b7.tar.gz) = 104781 bytes
+BLAKE2s (biolibc-0.2.1.7-8197c7c4825f1e6f68bc6a9e79edfdeec464f757.tar.gz) = 49e46de6277fc786a7986a87b33ff2151754b9783b9f1c500798f3e2a5be8962
+SHA512 (biolibc-0.2.1.7-8197c7c4825f1e6f68bc6a9e79edfdeec464f757.tar.gz) = d3f23401256cdacebc8b6f3156e216da4b8989b84d79e4d36982dfdd3eb7d4b622128188a52595f1cf910e0a8fce5f6ac87cfab257599826979ef196d267a00f
+Size (biolibc-0.2.1.7-8197c7c4825f1e6f68bc6a9e79edfdeec464f757.tar.gz) = 111556 bytes