biolibc: Update to 0.2.1.14

To: pkgsrc-wip-changes%NetBSD.org@localhost
Subject: biolibc: Update to 0.2.1.14
From: Jason Bacon <bacon%NetBSD.org@localhost>
Date: Sat, 15 Jan 2022 17:59:05 +0000
Module Name:	pkgsrc-wip
Committed By:	Jason Bacon <bacon%NetBSD.org@localhost>
Pushed By:	outpaddling
Date:		Sat Jan 15 11:59:05 2022 -0600
Changeset:	7165c17011e6fa070b2cee22db672ef2f4de1813

Modified Files:
	biolibc/Makefile
	biolibc/PLIST
	biolibc/buildlink3.mk
	biolibc/distinfo

Log Message:
biolibc: Update to 0.2.1.14

Regenerate accessors and mutators with latest auto-gen-get-set

To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=7165c17011e6fa070b2cee22db672ef2f4de1813

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

diffstat:
 biolibc/Makefile      |  4 ++--
 biolibc/PLIST         | 44 ++++++++++++++++++++++++++++++++++++++++++++
 biolibc/buildlink3.mk |  2 +-
 biolibc/distinfo      |  6 +++---
 4 files changed, 50 insertions(+), 6 deletions(-)

diffs:
diff --git a/biolibc/Makefile b/biolibc/Makefile
index 2259605f9e..959dd53446 100644
--- a/biolibc/Makefile
+++ b/biolibc/Makefile
@@ -1,9 +1,9 @@
 # $NetBSD$
 
-DISTNAME=	biolibc-0.2.1.12
+DISTNAME=	biolibc-0.2.1.14
 CATEGORIES=	biology
 MASTER_SITES=	${MASTER_SITE_GITHUB:=auerlab/}
-GITHUB_TAG=	e5f181c86e6f2a01fbd5ee85f90261f41ce96048
+GITHUB_TAG=	b703ddcea5ddc43375cee1b08b31ab96ccfdcd5f
 
 MAINTAINER=	bacon%NetBSD.org@localhost
 HOMEPAGE=	https://github.com/auerlab/biolibc
diff --git a/biolibc/PLIST b/biolibc/PLIST
index e4da818d02..eee5319720 100644
--- a/biolibc/PLIST
+++ b/biolibc/PLIST
@@ -1,16 +1,46 @@
 @comment $NetBSD$
+include/biolibc/bed-accessors.h
+include/biolibc/bed-mutators.h
+include/biolibc/bed-rvs.h
 include/biolibc/bed.h
 include/biolibc/biolibc.h
 include/biolibc/biostring.h
+include/biolibc/fasta-accessors.h
+include/biolibc/fasta-mutators.h
+include/biolibc/fasta-rvs.h
 include/biolibc/fasta.h
+include/biolibc/fastq-accessors.h
+include/biolibc/fastq-mutators.h
+include/biolibc/fastq-rvs.h
 include/biolibc/fastq.h
+include/biolibc/fastx-accessors.h
+include/biolibc/fastx-mutators.h
+include/biolibc/fastx-rvs.h
 include/biolibc/fastx.h
+include/biolibc/gff-accessors.h
+include/biolibc/gff-mutators.h
+include/biolibc/gff-rvs.h
 include/biolibc/gff.h
+include/biolibc/overlap-accessors.h
+include/biolibc/overlap-mutators.h
+include/biolibc/overlap-rvs.h
 include/biolibc/overlap.h
+include/biolibc/pos-list-accessors.h
+include/biolibc/pos-list-mutators.h
+include/biolibc/pos-list-rvs.h
 include/biolibc/pos-list.h
+include/biolibc/sam-accessors.h
+include/biolibc/sam-buff-accessors.h
+include/biolibc/sam-buff-mutators.h
+include/biolibc/sam-buff-rvs.h
 include/biolibc/sam-buff.h
+include/biolibc/sam-mutators.h
+include/biolibc/sam-rvs.h
 include/biolibc/sam.h
 include/biolibc/translate.h
+include/biolibc/vcf-accessors.h
+include/biolibc/vcf-mutators.h
+include/biolibc/vcf-rvs.h
 include/biolibc/vcf.h
 lib/libbiolibc.a
 lib/libbiolibc.so
@@ -58,6 +88,11 @@ man/man3/BL_FASTQ_SEQ.3
 man/man3/BL_FASTQ_SEQ_AE.3
 man/man3/BL_FASTQ_SEQ_ARRAY_SIZE.3
 man/man3/BL_FASTQ_SEQ_LEN.3
+man/man3/BL_FASTX_FASTA.3
+man/man3/BL_FASTX_FASTQ.3
+man/man3/BL_FASTX_FORMAT.3
+man/man3/BL_FASTX_UNION.3
+man/man3/BL_FASTX_}.3
 man/man3/BL_GFF_ATTRIBUTES.3
 man/man3/BL_GFF_ATTRIBUTES_AE.3
 man/man3/BL_GFF_END.3
@@ -98,6 +133,7 @@ man/man3/BL_SAM_BUFF_MAPQ_HIGH.3
 man/man3/BL_SAM_BUFF_MAPQ_LOW.3
 man/man3/BL_SAM_BUFF_MAPQ_MIN.3
 man/man3/BL_SAM_BUFF_MAPQ_SUM.3
+man/man3/BL_SAM_BUFF_MAX_ALIGNMENTS.3
 man/man3/BL_SAM_BUFF_MAX_COUNT.3
 man/man3/BL_SAM_BUFF_MAX_DISCARDED_SCORE.3
 man/man3/BL_SAM_BUFF_MIN_DISCARDED_SCORE.3
@@ -136,6 +172,7 @@ man/man3/BL_VCF_FILTER.3
 man/man3/BL_VCF_FILTER_AE.3
 man/man3/BL_VCF_FORMAT.3
 man/man3/BL_VCF_FORMAT_AE.3
+man/man3/BL_VCF_FORMAT_LEN.3
 man/man3/BL_VCF_FORMAT_MAX.3
 man/man3/BL_VCF_ID.3
 man/man3/BL_VCF_ID_AE.3
@@ -240,6 +277,11 @@ man/man3/bl_fastx_qual_len.3
 man/man3/bl_fastx_read.3
 man/man3/bl_fastx_seq.3
 man/man3/bl_fastx_seq_len.3
+man/man3/bl_fastx_set_fasta.3
+man/man3/bl_fastx_set_fastq.3
+man/man3/bl_fastx_set_format.3
+man/man3/bl_fastx_set_union.3
+man/man3/bl_fastx_set_}.3
 man/man3/bl_fastx_write.3
 man/man3/bl_gff_read.3
 man/man3/bl_gff_set_attributes.3
@@ -302,6 +344,7 @@ man/man3/bl_sam_buff_set_mapq_high.3
 man/man3/bl_sam_buff_set_mapq_low.3
 man/man3/bl_sam_buff_set_mapq_min.3
 man/man3/bl_sam_buff_set_mapq_sum.3
+man/man3/bl_sam_buff_set_max_alignments.3
 man/man3/bl_sam_buff_set_max_count.3
 man/man3/bl_sam_buff_set_max_discarded_score.3
 man/man3/bl_sam_buff_set_min_discarded_score.3
@@ -359,6 +402,7 @@ man/man3/bl_vcf_set_filter_cpy.3
 man/man3/bl_vcf_set_format.3
 man/man3/bl_vcf_set_format_ae.3
 man/man3/bl_vcf_set_format_cpy.3
+man/man3/bl_vcf_set_format_len.3
 man/man3/bl_vcf_set_format_max.3
 man/man3/bl_vcf_set_id_ae.3
 man/man3/bl_vcf_set_id_cpy.3
diff --git a/biolibc/buildlink3.mk b/biolibc/buildlink3.mk
index a3b97736ec..211abe9f5f 100644
--- a/biolibc/buildlink3.mk
+++ b/biolibc/buildlink3.mk
@@ -5,7 +5,7 @@ BUILDLINK_TREE+=	biolibc
 .if !defined(BIOLIBC_BUILDLINK3_MK)
 BIOLIBC_BUILDLINK3_MK:=
 
-BUILDLINK_API_DEPENDS.biolibc+=	biolibc>=0.2.1.10
+BUILDLINK_API_DEPENDS.biolibc+=	biolibc>=0.2.1.14
 BUILDLINK_PKGSRCDIR.biolibc?=	../../wip/biolibc
 
 .include "../../wip/libxtend/buildlink3.mk"
diff --git a/biolibc/distinfo b/biolibc/distinfo
index 433063cb53..c5f8f246b7 100644
--- a/biolibc/distinfo
+++ b/biolibc/distinfo
@@ -1,5 +1,5 @@
 $NetBSD$
 
-BLAKE2s (biolibc-0.2.1.12-e5f181c86e6f2a01fbd5ee85f90261f41ce96048.tar.gz) = ce77197e6d74d0c90cfa474a78c1598efccc82e4276d6eb530267a57270bd535
-SHA512 (biolibc-0.2.1.12-e5f181c86e6f2a01fbd5ee85f90261f41ce96048.tar.gz) = cb7428a448ed10d0862c93a9843e598f8ba5dfd4568255c74dd1c3d70f2698ac5b920222cfc8a62c40c9859dc813b4976bbe5ded8c75742ddacf4c6e009936fb
-Size (biolibc-0.2.1.12-e5f181c86e6f2a01fbd5ee85f90261f41ce96048.tar.gz) = 111667 bytes
+BLAKE2s (biolibc-0.2.1.14-b703ddcea5ddc43375cee1b08b31ab96ccfdcd5f.tar.gz) = b33c7de5ad072cb5374ed066e6d5ca0cd7df56d65db30cf27b00488759af7d95
+SHA512 (biolibc-0.2.1.14-b703ddcea5ddc43375cee1b08b31ab96ccfdcd5f.tar.gz) = ffef192b9e8b0f31c212282310f8a5dee83e48d2708ac037eb6585dc527ca37aa7d6801b5707532adbf42fe6b80ad30f0d427bb75b232359c33acb0336617c65
+Size (biolibc-0.2.1.14-b703ddcea5ddc43375cee1b08b31ab96ccfdcd5f.tar.gz) = 117812 bytes
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