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biolibc: Update to 0.2.1.32
Module Name: pkgsrc-wip
Committed By: Jason Bacon <bacon%NetBSD.org@localhost>
Pushed By: outpaddling
Date: Fri Feb 4 09:25:59 2022 -0600
Changeset: 921baacad799b9fae35f018a685c1f821e89e9f0
Modified Files:
biolibc/Makefile
biolibc/PLIST
biolibc/buildlink3.mk
biolibc/distinfo
Log Message:
biolibc: Update to 0.2.1.32
Change GFF field names to conform to GFF3 specification
To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=921baacad799b9fae35f018a685c1f821e89e9f0
Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.
diffstat:
biolibc/Makefile | 4 ++--
biolibc/PLIST | 16 ++++++++--------
biolibc/buildlink3.mk | 2 +-
biolibc/distinfo | 6 +++---
4 files changed, 14 insertions(+), 14 deletions(-)
diffs:
diff --git a/biolibc/Makefile b/biolibc/Makefile
index 672d4ef158..a503789a07 100644
--- a/biolibc/Makefile
+++ b/biolibc/Makefile
@@ -1,9 +1,9 @@
# $NetBSD$
-DISTNAME= biolibc-0.2.1.31
+DISTNAME= biolibc-0.2.1.32
CATEGORIES= biology
MASTER_SITES= ${MASTER_SITE_GITHUB:=auerlab/}
-GITHUB_TAG= 4e0a1635e8d31541cb9f5103ad428b0103d05b6c
+GITHUB_TAG= dea4d0a2a511000fcf9999c017b0e9ad96c9eb8c
MAINTAINER= bacon%NetBSD.org@localhost
HOMEPAGE= https://github.com/auerlab/biolibc
diff --git a/biolibc/PLIST b/biolibc/PLIST
index 1b7a77a00d..10644ee342 100644
--- a/biolibc/PLIST
+++ b/biolibc/PLIST
@@ -102,8 +102,6 @@ man/man3/BL_FASTX_}.3
man/man3/BL_GFF_ATTRIBUTES.3
man/man3/BL_GFF_ATTRIBUTES_AE.3
man/man3/BL_GFF_END.3
-man/man3/BL_GFF_FEATURE.3
-man/man3/BL_GFF_FEATURE_AE.3
man/man3/BL_GFF_FEATURE_ID.3
man/man3/BL_GFF_FEATURE_ID_AE.3
man/man3/BL_GFF_FILE_POS.3
@@ -111,12 +109,14 @@ man/man3/BL_GFF_GENE_NAME.3
man/man3/BL_GFF_GENE_NAME_AE.3
man/man3/BL_GFF_PHASE.3
man/man3/BL_GFF_SCORE.3
-man/man3/BL_GFF_SEQUENCE.3
-man/man3/BL_GFF_SEQUENCE_AE.3
+man/man3/BL_GFF_SEQID.3
+man/man3/BL_GFF_SEQID_AE.3
man/man3/BL_GFF_SOURCE.3
man/man3/BL_GFF_SOURCE_AE.3
man/man3/BL_GFF_START.3
man/man3/BL_GFF_STRAND.3
+man/man3/BL_GFF_TYPE.3
+man/man3/BL_GFF_TYPE_AE.3
man/man3/BL_OVERLAP_FEATURE1_LEN.3
man/man3/BL_OVERLAP_FEATURE2_LEN.3
man/man3/BL_OVERLAP_OVERLAP_END.3
@@ -299,8 +299,6 @@ man/man3/bl_gff_set_attributes.3
man/man3/bl_gff_set_attributes_ae.3
man/man3/bl_gff_set_attributes_cpy.3
man/man3/bl_gff_set_end.3
-man/man3/bl_gff_set_feature_ae.3
-man/man3/bl_gff_set_feature_cpy.3
man/man3/bl_gff_set_feature_id.3
man/man3/bl_gff_set_feature_id_ae.3
man/man3/bl_gff_set_feature_id_cpy.3
@@ -310,12 +308,14 @@ man/man3/bl_gff_set_gene_name_ae.3
man/man3/bl_gff_set_gene_name_cpy.3
man/man3/bl_gff_set_phase.3
man/man3/bl_gff_set_score.3
-man/man3/bl_gff_set_sequence_ae.3
-man/man3/bl_gff_set_sequence_cpy.3
+man/man3/bl_gff_set_seqid_ae.3
+man/man3/bl_gff_set_seqid_cpy.3
man/man3/bl_gff_set_source_ae.3
man/man3/bl_gff_set_source_cpy.3
man/man3/bl_gff_set_start.3
man/man3/bl_gff_set_strand.3
+man/man3/bl_gff_set_type_ae.3
+man/man3/bl_gff_set_type_cpy.3
man/man3/bl_gff_skip_header.3
man/man3/bl_gff_to_bed.3
man/man3/bl_gff_write.3
diff --git a/biolibc/buildlink3.mk b/biolibc/buildlink3.mk
index 9b3c9eed9e..95212e07eb 100644
--- a/biolibc/buildlink3.mk
+++ b/biolibc/buildlink3.mk
@@ -5,7 +5,7 @@ BUILDLINK_TREE+= biolibc
.if !defined(BIOLIBC_BUILDLINK3_MK)
BIOLIBC_BUILDLINK3_MK:=
-BUILDLINK_API_DEPENDS.biolibc+= biolibc>=0.2.1.31
+BUILDLINK_API_DEPENDS.biolibc+= biolibc>=0.2.1.32
BUILDLINK_PKGSRCDIR.biolibc?= ../../wip/biolibc
.include "../../wip/libxtend/buildlink3.mk"
diff --git a/biolibc/distinfo b/biolibc/distinfo
index 2aafcf139b..e6c936f269 100644
--- a/biolibc/distinfo
+++ b/biolibc/distinfo
@@ -1,5 +1,5 @@
$NetBSD$
-BLAKE2s (biolibc-0.2.1.31-4e0a1635e8d31541cb9f5103ad428b0103d05b6c.tar.gz) = e9c896e2c58a9cc1b50e08f32c071eb0da3d66c79f9f835ba14d9ccbb5c4a24e
-SHA512 (biolibc-0.2.1.31-4e0a1635e8d31541cb9f5103ad428b0103d05b6c.tar.gz) = 71365749a4c34a65eeff0e95512ac6d1ccaead41047f1c0d3fded23bada0624ce6f3db539ca3e790f3ce1ae514eb1b1741e653909dcbda80b577c644e8e519b9
-Size (biolibc-0.2.1.31-4e0a1635e8d31541cb9f5103ad428b0103d05b6c.tar.gz) = 121389 bytes
+BLAKE2s (biolibc-0.2.1.32-dea4d0a2a511000fcf9999c017b0e9ad96c9eb8c.tar.gz) = 5d6dadfb70721c45d7675657e60677a4b52f0c4809bfc762fc1fee12ec00b9c7
+SHA512 (biolibc-0.2.1.32-dea4d0a2a511000fcf9999c017b0e9ad96c9eb8c.tar.gz) = 6b0afae6023ecc31da313ca3915dfc9db8b820266c77fab448379c58e6d0beda81d392165457755deadd5d1fd6cd196dedf2707f192681e614e3bf0bcf2e449b
+Size (biolibc-0.2.1.32-dea4d0a2a511000fcf9999c017b0e9ad96c9eb8c.tar.gz) = 121419 bytes
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