biolibc: Update to 0.2.2.16

[Jason Bacon <bacon%NetBSD.org@localhost>]

Module Name:	pkgsrc-wip
Committed By:	Jason Bacon <bacon%NetBSD.org@localhost>
Pushed By:	outpaddling
Date:		Fri Apr 8 08:13:20 2022 -0500
Changeset:	0a71335aec4945a65620d3f808fe9094a65398aa

Modified Files:
	biolibc/Makefile
	biolibc/PLIST
	biolibc/buildlink3.mk
	biolibc/distinfo

Log Message:
biolibc: Update to 0.2.2.16

Factor SAM-GFF compare functions out of diffanal
Create bl_sam_skip_header() and bl_sam_copy_header()

To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=0a71335aec4945a65620d3f808fe9094a65398aa

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

diffstat:
 biolibc/Makefile      | 4 ++--
 biolibc/PLIST         | 6 ++++++
 biolibc/buildlink3.mk | 2 +-
 biolibc/distinfo      | 6 +++---
 4 files changed, 12 insertions(+), 6 deletions(-)

diffs:
diff --git a/biolibc/Makefile b/biolibc/Makefile
index 948d1a8743..7199f8a9ba 100644
--- a/biolibc/Makefile
+++ b/biolibc/Makefile
@@ -1,9 +1,9 @@
 # $NetBSD$
 
-DISTNAME=	biolibc-0.2.2.14
+DISTNAME=	biolibc-0.2.2.16
 CATEGORIES=	biology
 MASTER_SITES=	${MASTER_SITE_GITHUB:=auerlab/}
-GITHUB_TAG=	75cf71f99b227b6085b18936458e0b0e1fd6bf2c
+GITHUB_TAG=	185382b106f2449345d7ccd36e6762b99ce31958
 
 MAINTAINER=	bacon%NetBSD.org@localhost
 HOMEPAGE=	https://github.com/auerlab/biolibc
diff --git a/biolibc/PLIST b/biolibc/PLIST
index 79f4313f84..eab14d0583 100644
--- a/biolibc/PLIST
+++ b/biolibc/PLIST
@@ -327,6 +327,8 @@ man/man3/bl_gff_index_set_start_ae.3
 man/man3/bl_gff_index_set_start_cpy.3
 man/man3/bl_gff_init.3
 man/man3/bl_gff_read.3
+man/man3/bl_gff_sam_cmp.3
+man/man3/bl_gff_sam_overlap.3
 man/man3/bl_gff_set_attributes.3
 man/man3/bl_gff_set_attributes_ae.3
 man/man3/bl_gff_set_attributes_cpy.3
@@ -402,9 +404,12 @@ man/man3/bl_sam_buff_set_trailing_alignments.3
 man/man3/bl_sam_buff_set_unmapped_alignments.3
 man/man3/bl_sam_buff_shift.3
 man/man3/bl_sam_copy.3
+man/man3/bl_sam_copy_header.3
 man/man3/bl_sam_fclose.3
 man/man3/bl_sam_fopen.3
 man/man3/bl_sam_free.3
+man/man3/bl_sam_gff_cmp.3
+man/man3/bl_sam_gff_overlap.3
 man/man3/bl_sam_init.3
 man/man3/bl_sam_read.3
 man/man3/bl_sam_set_cigar_ae.3
@@ -428,6 +433,7 @@ man/man3/bl_sam_set_seq_ae.3
 man/man3/bl_sam_set_seq_cpy.3
 man/man3/bl_sam_set_seq_len.3
 man/man3/bl_sam_set_tlen.3
+man/man3/bl_sam_skip_header.3
 man/man3/bl_sam_write.3
 man/man3/bl_vcf_call_downstream_of_alignment.3
 man/man3/bl_vcf_call_in_alignment.3
diff --git a/biolibc/buildlink3.mk b/biolibc/buildlink3.mk
index 70afaa3aaf..71ee340d30 100644
--- a/biolibc/buildlink3.mk
+++ b/biolibc/buildlink3.mk
@@ -5,7 +5,7 @@ BUILDLINK_TREE+=	biolibc
 .if !defined(BIOLIBC_BUILDLINK3_MK)
 BIOLIBC_BUILDLINK3_MK:=
 
-BUILDLINK_API_DEPENDS.biolibc+=	biolibc>=0.2.2.14
+BUILDLINK_API_DEPENDS.biolibc+=	biolibc>=0.2.2.16
 BUILDLINK_PKGSRCDIR.biolibc?=	../../wip/biolibc
 
 .include "../../wip/libxtend/buildlink3.mk"
diff --git a/biolibc/distinfo b/biolibc/distinfo
index fd4c031b83..d58daf8970 100644
--- a/biolibc/distinfo
+++ b/biolibc/distinfo
@@ -1,5 +1,5 @@
 $NetBSD$
 
-BLAKE2s (biolibc-0.2.2.14-75cf71f99b227b6085b18936458e0b0e1fd6bf2c.tar.gz) = e5d68c8dea6b8bead533efa941f9fa300f636ad893d995dea5ebd7cae5e2b2ff
-SHA512 (biolibc-0.2.2.14-75cf71f99b227b6085b18936458e0b0e1fd6bf2c.tar.gz) = 0141d1e8fab87248a1ead0f7d17ee9f4fdee9af0b6353e44e3b329374e9564d677c453cb642c73ac6032c0b6d7effe5db36fb5fed421ac20cff7e3ef4313a97b
-Size (biolibc-0.2.2.14-75cf71f99b227b6085b18936458e0b0e1fd6bf2c.tar.gz) = 131112 bytes
+BLAKE2s (biolibc-0.2.2.16-185382b106f2449345d7ccd36e6762b99ce31958.tar.gz) = e02489f887b5557eb895808d838e058c6e2936affd74289bae381a9165e324c2
+SHA512 (biolibc-0.2.2.16-185382b106f2449345d7ccd36e6762b99ce31958.tar.gz) = 10196fb786f913ca00a8f933f26db91c7286fd3d40c566f14592deeb8dd8528a850e72c44dd8fc1d76968b1ba276777773101a4a56f608d1def407389bfed964
+Size (biolibc-0.2.2.16-185382b106f2449345d7ccd36e6762b99ce31958.tar.gz) = 135058 bytes