wip clean-up: remove clustalx

[pin <voidpin%protonmail.com@localhost>]

Module Name:	pkgsrc-wip
Committed By:	pin <voidpin%protonmail.com@localhost>
Pushed By:	pin
Date:		Fri Jul 8 08:26:46 2022 +0200
Changeset:	0e80027d742c5944c4621da4db7b574ff2ee92cc

Modified Files:
	Makefile
Removed Files:
	clustalx/DESCR
	clustalx/Makefile
	clustalx/PLIST
	clustalx/distinfo
	clustalx/files/clustalx.sh

Log Message:
wip clean-up: remove clustalx

Source not available.
Depends on EOL Qt4.

To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=0e80027d742c5944c4621da4db7b574ff2ee92cc

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

diffstat:
 Makefile                   |  1 -
 clustalx/DESCR             | 21 ---------------------
 clustalx/Makefile          | 43 -------------------------------------------
 clustalx/PLIST             |  7 -------
 clustalx/distinfo          |  4 ----
 clustalx/files/clustalx.sh |  7 -------
 6 files changed, 83 deletions(-)

diffs:
diff --git a/Makefile b/Makefile
index ab6177f4d8..934de2c94f 100644
--- a/Makefile
+++ b/Makefile
@@ -469,7 +469,6 @@ SUBDIR+=	clisp-hg
 SUBDIR+=	clock-signal
 SUBDIR+=	clockspeed
 SUBDIR+=	cloud-nuke
-SUBDIR+=	clustalx
 SUBDIR+=	cluster-admin
 SUBDIR+=	clustershell
 SUBDIR+=	clutter-gst
diff --git a/clustalx/DESCR b/clustalx/DESCR
deleted file mode 100644
index b6926f2e7e..0000000000
--- a/clustalx/DESCR
+++ /dev/null
@@ -1,21 +0,0 @@
-Clustal X is a new windows interface for the ClustalW multiple
-sequence alignment program.  It provides an integrated environment for
-performing multiple sequence and profile alignments and analysing the
-results.  The sequence alignment is displayed in a window on the
-screen.  A versatile coloring scheme has been incorporated allowing
-you to highlight conserved features in the alignment.  The pull-down
-menus at the top of the window allow you to select all the options
-required for traditional multiple sequence and profile alignment.
-
-You can cut-and-paste sequences to change the order of the alignment;
-you can select a subset of sequences to be aligned; you can select a
-sub-range of the alignment to be realigned and inserted back into the
-original alignment.
-
-Alignment quality analysis can be performed and low-scoring segments
-or exceptional residues can be highlighted.
-
-ClustalX is available for a number of different platforms including:
-SUN Solaris, IRIX5.3 on Silicon Graphics, Digital UNIX on DECStations,
-Microsoft Windows (32 bit) for PC's, Linux ELF for x86 PC's and
-Macintosh PowerMac.
diff --git a/clustalx/Makefile b/clustalx/Makefile
deleted file mode 100644
index 82101e2ef2..0000000000
--- a/clustalx/Makefile
+++ /dev/null
@@ -1,43 +0,0 @@
-# $NetBSD: Makefile,v 1.13 2014/10/09 14:06:26 thomasklausner Exp $
-#
-
-DISTNAME=		clustalx-2.0.12
-PKGREVISION=		1
-CATEGORIES=		biology
-MASTER_SITES=		ftp://ftp.ebi.ac.uk/pub/software/clustalw2/2.0.12/
-
-MAINTAINER=	brook%nmsu.edu@localhost
-HOMEPAGE=	http://bips.u-strasbg.fr/fr/Documentation/ClustalX/
-COMMENT=	General purpose multiple alignment program for DNA or proteins (X11)
-LICENSE=	clustal-license
-
-USE_LANGUAGES+=		c++
-MESSAGE_SUBST+=		PREFIX=${PREFIX}
-
-SUBST_CLASSES+=		clustalx
-SUBST_STAGE.clustalx=	pre-configure
-SUBST_MESSAGE.clustalx=	Fixing clustalx shell script
-SUBST_FILES.clustalx=	clustalx.sh
-SUBST_VARS.clustalx=	LIBEXECDIR
-
-BINDIR=			${PREFIX}/bin
-LIBEXECDIR=		${PREFIX}/libexec/clustalx
-
-INSTALLATION_DIRS+=	${BINDIR} ${LIBEXECDIR}
-
-post-extract:
-	${CP} ${FILESDIR}/clustalx.sh ${WRKSRC}
-
-do-configure:
-	(cd ${WRKSRC} && ${QTDIR}/bin/qmake)
-
-do-install:
-	${INSTALL_SCRIPT} ${WRKSRC}/clustalx.sh ${DESTDIR}${BINDIR}/clustalx
-	${INSTALL_PROGRAM} ${WRKSRC}/clustalx ${DESTDIR}${LIBEXECDIR}
-.for f in colprot.xml coldna.xml colprint.xml clustalx.hlp
-	${INSTALL_DATA} ${WRKSRC}/${f} ${DESTDIR}${LIBEXECDIR}
-.endfor
-
-.include "../../x11/qt4-libs/buildlink3.mk"
-.include "../../x11/qt4-tools/buildlink3.mk"
-.include "../../mk/bsd.pkg.mk"
diff --git a/clustalx/PLIST b/clustalx/PLIST
deleted file mode 100644
index 9f629e870a..0000000000
--- a/clustalx/PLIST
+++ /dev/null
@@ -1,7 +0,0 @@
-@comment $NetBSD: PLIST,v 1.3 2010/03/16 15:12:46 brook1 Exp $
-bin/clustalx
-libexec/clustalx/clustalx
-libexec/clustalx/clustalx.hlp
-libexec/clustalx/coldna.xml
-libexec/clustalx/colprint.xml
-libexec/clustalx/colprot.xml
diff --git a/clustalx/distinfo b/clustalx/distinfo
deleted file mode 100644
index 4ccb116134..0000000000
--- a/clustalx/distinfo
+++ /dev/null
@@ -1,4 +0,0 @@
-$NetBSD: distinfo,v 1.3 2010/03/16 15:12:46 brook1 Exp $
-
-RMD160 (clustalx-2.0.12.tar.gz) = 8496a865acf7dbf935052bcdc0377bb2ce32baed
-Size (clustalx-2.0.12.tar.gz) = 337330 bytes
diff --git a/clustalx/files/clustalx.sh b/clustalx/files/clustalx.sh
deleted file mode 100644
index 4bac252ff3..0000000000
--- a/clustalx/files/clustalx.sh
+++ /dev/null
@@ -1,7 +0,0 @@
-#!/bin/sh
-# $NetBSD: clustalx.sh,v 1.1 2010/03/16 15:12:46 brook1 Exp $
-
-LIBEXECDIR=@LIBEXECDIR@
-CLUSTALX=${LIBEXECDIR}/clustalx
-
-exec ${CLUSTALX} $*