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rna-seq: Switch to newly committed biology/gffread
Module Name: pkgsrc-wip
Committed By: Jason Bacon <bacon%NetBSD.org@localhost>
Pushed By: outpaddling
Date: Sun Nov 6 17:02:41 2022 -0600
Changeset: 45ddec790edcd1c0e87c5275d9165da602ea2811
Modified Files:
rna-seq/Makefile
Log Message:
rna-seq: Switch to newly committed biology/gffread
To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=45ddec790edcd1c0e87c5275d9165da602ea2811
Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.
diffstat:
rna-seq/Makefile | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diffs:
diff --git a/rna-seq/Makefile b/rna-seq/Makefile
index 9407d79371..478c2c188a 100644
--- a/rna-seq/Makefile
+++ b/rna-seq/Makefile
@@ -11,7 +11,7 @@ COMMENT= Core tools needed for RNA-Seq analysis
DEPENDS+= fastq-trim>=0:../../biology/fastq-trim
DEPENDS+= fastqc>=0:../../biology/fastqc
DEPENDS+= biolibc-tools>=0:../../biology/biolibc-tools
-DEPENDS+= gffread>=0:../../wip/gffread
+DEPENDS+= gffread>=0:../../biology/gffread
DEPENDS+= kallisto>=0:../../biology/kallisto
DEPENDS+= hisat2>=0:../../biology/hisat2
DEPENDS+= samtools>=0:../../biology/samtools
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