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(wip/R) import R-4.3.1
Module Name: pkgsrc-wip
Committed By: Makoto mef Fujiwara <mef%NetBSD.org@localhost>
Pushed By: mef
Date: Thu Jul 6 21:35:47 2023 +0900
Changeset: 14fe2814b925695701cab9dee31ae8dcaf5b1068
Added Files:
R/DESCR
R/Makefile
R/Makefile.extension
R/PLIST
R/PLIST.Darwin
R/buildlink3.mk
R/distinfo
R/files/pkg-index.tmpl
R/patches/patch-configure.ac
R/patches/patch-m4_R.m4
R/patches/patch-src_library_stats_src_Makefile.in
R/patches/patch-src_main_character.c
Log Message:
(wip/R) import R-4.3.1
R is a language which bears a passing resemblance to the S language
developed at AT&T Bell Laboratories. It provides support for a
variety of statistical and graphical analyses. R is a true
computer language which contains a number of control-flow
constructions for iteration and alternation. It allows users to
add additional functionality by defining new functions. On
platforms which support the dlopen (3) interface, Fortran and C
code can be linked and called at run time.
R is very close to S in both syntax and semantics, but is not identical.
Whether this is a bug or feature is an open question.
To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=14fe2814b925695701cab9dee31ae8dcaf5b1068
Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.
diffstat:
R/DESCR | 11 +
R/Makefile | 203 +++
R/Makefile.extension | 79 +
R/PLIST | 1690 +++++++++++++++++++++
R/PLIST.Darwin | 612 ++++++++
R/buildlink3.mk | 22 +
R/distinfo | 9 +
R/files/pkg-index.tmpl | 26 +
R/patches/patch-configure.ac | 112 ++
R/patches/patch-m4_R.m4 | 60 +
R/patches/patch-src_library_stats_src_Makefile.in | 14 +
R/patches/patch-src_main_character.c | 22 +
12 files changed, 2860 insertions(+)
diffs:
diff --git a/R/DESCR b/R/DESCR
new file mode 100644
index 0000000000..abad643ee4
--- /dev/null
+++ b/R/DESCR
@@ -0,0 +1,11 @@
+R is a language which bears a passing resemblance to the S language
+developed at AT&T Bell Laboratories. It provides support for a
+variety of statistical and graphical analyses. R is a true
+computer language which contains a number of control-flow
+constructions for iteration and alternation. It allows users to
+add additional functionality by defining new functions. On
+platforms which support the dlopen (3) interface, Fortran and C
+code can be linked and called at run time.
+
+R is very close to S in both syntax and semantics, but is not identical.
+Whether this is a bug or feature is an open question.
diff --git a/R/Makefile b/R/Makefile
new file mode 100644
index 0000000000..19bb63dfe2
--- /dev/null
+++ b/R/Makefile
@@ -0,0 +1,203 @@
+# $NetBSD: Makefile,v 1.240 2023/06/06 12:41:50 riastradh Exp $
+
+#
+# If updating this package, please try to ensure PLIST.Darwin is kept in sync
+# to avoid unnecessarily breaking macOS users.
+#
+DISTNAME= R-4.3.1
+CATEGORIES= math
+MASTER_SITES= ${MASTER_SITE_R_CRAN:=base/R-4/}
+
+MAINTAINER= pkgsrc-users%NetBSD.org@localhost
+HOMEPAGE= https://www.R-project.org/
+COMMENT= Statistical language for data analysis and graphics
+LICENSE= gnu-gpl-v2
+
+USE_GCC_RUNTIME= yes
+
+BUILD_TARGET= all info
+INSTALL_TARGET= install install-info
+TEST_TARGET= check
+USE_LANGUAGES= c c++ fortran
+USE_LIBTOOL= yes
+USE_TOOLS+= aclocal autoconf autoreconf automake gmake gzip:run
+USE_TOOLS+= makeinfo perl:run pkg-config sed unzip:run
+TEXINFO_REQD= 5.1
+INFO_FILES= yes
+
+PTHREAD_AUTO_VARS= yes
+
+GNU_CONFIGURE= yes
+GNU_CONFIGURE_ICONV= no
+CONFIGURE_ARGS+= --enable-R-shlib
+CONFIGURE_ARGS+= --with-readline
+CONFIGURE_ARGS+= --with-tcltk
+CONFIGURE_ARGS+= --with-tcl-config=${BUILDLINK_PREFIX.tcl}/lib/tclConfig.sh
+CONFIGURE_ARGS+= --with-tk-config=${BUILDLINK_PREFIX.tk}/lib/tkConfig.sh
+
+.include "../../mk/bsd.prefs.mk"
+.if ${OPSYS} == "NetBSD" || ${OPSYS} == "FreeBSD"
+CONFIGURE_ARGS+= --enable-long-double=no
+.endif
+
+.if ${OPSYS} != "Linux"
+USE_GNU_ICONV= yes # latin1 support, iconvlist
+.endif
+
+PLIST_VARS+= x11
+
+# Disable Mac OS specific support used by R.app
+.if ${OPSYS} == "Darwin"
+CONFIGURE_ARGS+= --disable-R-framework
+CONFIGURE_ARGS+= --with-aqua
+CONFIGURE_ARGS+= --without-x
+.else
+USE_TOOLS+= xmkmf
+CONFIGURE_ARGS+= --with-x
+PLIST.x11= yes
+.endif
+
+# Think about making this consistent with Numpy, using a full
+# BLAS/LAPACK by default and only on request accelerate. Just
+# BLAS_ACCEPTED= ${_BLAS_TYPES} accelerate.framework
+# (here and in buildlink3.mk) and deleting the first conditional
+# branch might work, given that R knows what todo with
+# -framework Accelerate. Someone on Darwin really needs to test.
+.if exists(/System/Library/Frameworks/Accelerate.framework)
+CONFIGURE_ARGS+= --with-blas="-framework Accelerate"
+CONFIGURE_ARGS+= --with-lapack # contained in the above
+.else
+# Could be two distinct libraries. Note that, at least int the past,
+# R folks were not fond of linking external lapack.
+CONFIGURE_ARGS+= --disable-BLAS-shlib
+CONFIGURE_ARGS+= --with-blas=${BLAS_LIBS:Q}
+CONFIGURE_ARGS+= --with-lapack=${LAPACK_LIBS:Q}
+.endif
+
+# Work around missing MAIN__() definition used in -lF77 by AC_CHECK_LIB.
+# and other failures due to not linking to support libs during testing
+CONFIGURE_ENV+= ac_cv_lib_blas_dgemm=yes
+CONFIGURE_ENV+= ac_cv_lib_blas_dgemm_=yes
+CONFIGURE_ENV+= r_cv_complete_blas=yes
+
+# Broken test for bzlib >= 1.0.5 in R 2.7.0
+CONFIGURE_ENV+= r_cv_have_bzlib=yes
+# Override zlib 1.2.5 requirement
+CONFIGURE_ENV+= r_cv_header_zlib_h=yes
+
+CONFIGURE_ENV+= GETWD=${TOOLS_PWD_CMD}
+CONFIGURE_ENV+= lt_cv_path_LD=${LD:Q}
+CONFIGURE_ENV+= lt_cv_path_SED=${TOOLS_SED}
+CONFIGURE_ENV+= ac_cv_path_R_GZIPCMD=${TOOLS_GZIP_CMD}
+CONFIGURE_ENV+= ac_cv_path_R_UNZIPCMD=${TOOLS_PATH.unzip}
+CONFIGURE_ENV+= r_cv_prog_f77_flag_mieee=no
+CONFIGURE_ENV+= ac_cv_path_PDFLATEX=""
+
+# We don't want "lib64"
+CONFIGURE_ENV+= LIBnn=lib
+
+# Package assumes it can append to files (specifically DESCRIPTION) that have
+# been installed SHAREMODE
+SHAREMODE= 644
+
+CONFIGURE_ARGS.Darwin+= --disable-openmp
+
+# R_PAPERSIZE can be: A4, Letter, Legal, Executive
+.if defined(PAPERSIZE)
+R_PAPERSIZE?= ${PAPERSIZE}
+.else
+R_PAPERSIZE?= A4
+.endif
+.if (${R_PAPERSIZE} == "Letterdj")
+R_PAPERSIZE= Letter
+.endif
+CONFIGURE_ENV+= R_PAPERSIZE=${R_PAPERSIZE:Q}
+
+# These macros are used during the build, so strip off the -o,-g flags.
+INSTALL_DATA= ${INSTALL} ${COPY} -m ${SHAREMODE}
+INSTALL_SCRIPT= ${INSTALL} ${COPY} -m ${BINMODE}
+
+## to build NEWS.pdf
+#TOOL_DEPENDS+= tex-latex-bin-[0-9]*:../../print/tex-latex-bin
+#TOOL_DEPENDS+= tex-metafont-[0-9]*:../../fonts/tex-metafont
+#TOOL_DEPENDS+= tex-ae-[0-9]*:../../fonts/tex-ae
+#TOOL_DEPENDS+= tex-ec-[0-9]*:../../fonts/tex-ec
+#TOOL_DEPENDS+= tex-tools-[0-9]*:../../print/tex-tools
+#TOOL_DEPENDS+= tex-url-[0-9]*:../../print/tex-url
+#TOOL_DEPENDS+= tex-oberdiek-[0-9]*:../../print/tex-oberdiek
+#TOOL_DEPENDS+= tex-amsfonts-[0-9]*:../../fonts/tex-amsfonts
+#TOOL_DEPENDS+= tex-cm-[0-9]*:../../fonts/tex-cm
+#TOOL_DEPENDS+= tex-cm-super-[0-9]*:../../fonts/tex-cm-super
+#TOOL_DEPENDS+= tex-fontname-[0-9]*:../../fonts/tex-fontname
+#TOOL_DEPENDS+= tex-graphics-[0-9]*:../../print/tex-graphics
+#TOOL_DEPENDS+= tex-hyperref-[0-9]*:../../print/tex-hyperref
+#TOOL_DEPENDS+= tex-iftex>=1.0d:../../print/tex-iftex
+#TOOL_DEPENDS+= tex-latex-[0-9]*:../../print/tex-latex
+#TOOL_DEPENDS+= tex-latexconfig-[0-9]*:../../print/tex-latexconfig
+#TOOL_DEPENDS+= tex-mptopdf-[0-9]*:../../graphics/tex-mptopdf
+#TOOL_DEPENDS+= tex-pdftex-def-[0-9]*:../../print/tex-pdftex
+
+SUBST_CLASSES+= rpath
+SUBST_STAGE.rpath= pre-configure
+SUBST_FILES.rpath= configure.ac
+SUBST_VARS.rpath= COMPILER_RPATH_FLAG
+
+SUBST_CLASSES+= fixwrap
+SUBST_STAGE.fixwrap= post-build
+SUBST_FILES.fixwrap= libtool
+SUBST_SED.fixwrap= -e "s,${WRAPPER_BINDIR}/libtool,${PKG_LIBTOOL},g"
+
+BUILDLINK_API_DEPENDS.bzip2+= bzip2>=1.0.5
+
+# failed to convert strong functions and variables: Invalid type identifier
+CTF_FILES_SKIP+= lib/R/library/mgcv/libs/mgcv.so
+
+# Exposes PKG_CONFIG_LIBDIR buildlink paths in a comment.
+CHECK_WRKREF_SKIP+= lib/R/etc/Makeconf
+
+pre-configure:
+ ${RUN} cd ${WRKSRC} && autoreconf -fvi || ${ECHO} Ignore the warnings from autoreconf
+
+# Fix library names. Relies on build system using -headerpad_max_install_names.
+.if ${OPSYS} == "Darwin"
+.PHONY: fix-darwin-install-name
+post-install: fix-darwin-install-name
+fix-darwin-install-name:
+ ${FIND} ${DESTDIR}${PREFIX} -name "*.so" | while read lib; do \
+ libname=`basename $${lib}`; \
+ libdir=`dirname $${lib} | sed -e 's,${DESTDIR},,'`; \
+ install_name_tool -id $${libdir}/$${libname} $${lib}; \
+ done
+.endif
+
+.include "../../archivers/bzip2/buildlink3.mk"
+.include "../../archivers/xz/buildlink3.mk"
+.include "../../converters/libiconv/buildlink3.mk"
+.include "../../devel/gettext-lib/buildlink3.mk"
+.include "../../devel/glib2/buildlink3.mk"
+.include "../../devel/pango/buildlink3.mk"
+.include "../../devel/pcre2/buildlink3.mk"
+# uses callback interface
+.include "../../devel/readline/buildlink3.mk"
+.include "../../devel/zlib/buildlink3.mk"
+.include "../../graphics/cairo/buildlink3.mk"
+.include "../../mk/jpeg.buildlink3.mk"
+.include "../../graphics/png/buildlink3.mk"
+.include "../../graphics/tiff/buildlink3.mk"
+.if !exists(/System/Library/Frameworks/Accelerate.framework)
+.include "../../mk/blas.buildlink3.mk"
+.endif
+.include "../../www/curl/buildlink3.mk"
+.include "../../x11/tk/buildlink3.mk"
+
+.if ${OPSYS} != "Darwin"
+.include "../../x11/libXt/buildlink3.mk"
+.endif
+
+INSTALL_TEMPLATES+= ../../math/R/files/pkg-index.tmpl
+DEINSTALL_TEMPLATES+= ../../math/R/files/pkg-index.tmpl
+PRINT_PLIST_AWK+= /^lib\/R\/doc\/html\/packages.html$$/ { next; }
+
+.include "../../mk/pthread.buildlink3.mk"
+.include "../../mk/atomic64.mk"
+.include "../../mk/bsd.pkg.mk"
diff --git a/R/Makefile.extension b/R/Makefile.extension
new file mode 100644
index 0000000000..332bca4bab
--- /dev/null
+++ b/R/Makefile.extension
@@ -0,0 +1,79 @@
+# $NetBSD: Makefile.extension,v 1.28 2022/03/23 21:16:44 wiz Exp $
+#
+# This Makefile fragment is included by packages for R library packages.
+#
+# To use this Makefile fragment, simply:
+#
+# (1) define R_PKGNAME and R_PKGVER to the R package name and version
+# for the package desired.
+# (2) Include this Makefile fragment in the package Makefile
+
+_VARGROUPS+= R
+_PKG_VARS.R= R_PKGNAME R_PKGVER R_INST_DIRS
+_USE_VARS.R= DISTNAME
+_DEF_VARS.R= PKGNAME DIST_SUBDIR CATEGORIES HOMEPAGE \
+ INSTALL_TEMPLATES DEINSTALL_TEMPLATES
+_IGN_VARS.R= INSTALLATION_DIRS MAKE_ENV INSTALL_ENV MASTER_SITES \
+ MASTER_SITE_R_CRAN WRKDIR R_LIB DESTDIR PREFIX WRKSRC \
+ R_PKG_INSTALL_ARGS R_HOMEPAGE_BASE CONFIGURE_ARGS \
+ GENERATE_PLIST OPSYS CHECK_FILES_SKIP
+
+.if defined(DISTNAME)
+R_PKGNAME?= ${DISTNAME:C/_.*//}
+R_PKGVER?= ${DISTNAME:C/.*_//}
+.else
+DISTNAME?= ${R_PKGNAME}_${R_PKGVER}
+.endif
+PKGNAME?= R-${R_PKGNAME}-${R_PKGVER:S/-/./}
+MASTER_SITES?= ${MASTER_SITE_R_CRAN:=contrib/} \
+ ${MASTER_SITE_R_CRAN:=contrib/Archive/${R_PKGNAME}/}
+DIST_SUBDIR?= R
+CATEGORIES+= math R
+HOMEPAGE?= https://CRAN.R-project.org/package=${R_PKGNAME}
+
+WRKSRC?= ${WRKDIR}/${R_PKGNAME}
+
+INSTALLATION_DIRS= ${R_LIB}
+
+INSTALL_ENV+= R_LIBS=
+
+do-build:
+
+do-test:
+ ${RUN} cd ${WRKDIR} && ${PKGSRC_SETENV} ${MAKE_ENV} ${TEST_ENV} \
+ ${PREFIX}/bin/R CMD check ${R_PKGNAME}
+
+do-install:
+ ${RUN} ${PKGSRC_SETENV} ${INSTALL_ENV} ${MAKE_ENV} \
+ ${PREFIX}/bin/R CMD INSTALL ${R_PKG_INSTALL_ARGS} ${WRKSRC}
+
+.include "../../mk/bsd.fast.prefs.mk"
+
+.if ${OPSYS} == "Darwin"
+.PHONY: fix-darwin-install-name
+post-install: fix-darwin-install-name
+fix-darwin-install-name:
+ ${FIND} ${DESTDIR}${PREFIX} -name "*.so" | while read lib; do \
+ libname=`basename $${lib}`; \
+ libdir=`dirname $${lib} | sed -e 's,${DESTDIR},,'`; \
+ install_name_tool -id $${libdir}/$${libname} $${lib}; \
+ done
+.endif
+
+R_LIB= lib/R/library
+R_INST_DIRS?= ${R_PKGNAME}
+R_HOMEPAGE_BASE= http://cran.r-project.org/web/packages
+R_PKG_INSTALL_ARGS= -l ${DESTDIR}${PREFIX}/${R_LIB}
+
+.if defined(CONFIGURE_ARGS)
+R_PKG_INSTALL_ARGS+= --configure-args='${CONFIGURE_ARGS}'
+.endif
+
+GENERATE_PLIST+= ( cd ${DESTDIR}${PREFIX}; for dir in ${R_INST_DIRS}; do \
+ ${FIND} ${R_LIB}/$${dir} \( -type f -o -type l \) -print; done ) | ${SORT} -u;
+
+INSTALL_TEMPLATES+= ../../math/R/files/pkg-index.tmpl
+DEINSTALL_TEMPLATES+= ../../math/R/files/pkg-index.tmpl
+CHECK_FILES_SKIP+= ${PREFIX}/${R_LIB}/R.css
+
+.include "../../math/R/buildlink3.mk"
diff --git a/R/PLIST b/R/PLIST
new file mode 100644
index 0000000000..9fc905e1e9
--- /dev/null
+++ b/R/PLIST
@@ -0,0 +1,1690 @@
+@comment $NetBSD$
+bin/R
+bin/Rscript
+info/R-FAQ.info.gz
+info/R-admin.info.gz
+info/R-data.info.gz
+info/R-exts.info.gz
+info/R-intro.info.gz
+info/R-ints.info.gz
+info/R-lang.info.gz
+lib/R/COPYING
+lib/R/SVN-REVISION
+lib/R/bin/BATCH
+lib/R/bin/COMPILE
+lib/R/bin/INSTALL
+lib/R/bin/LINK
+lib/R/bin/R
+lib/R/bin/REMOVE
+lib/R/bin/Rcmd
+lib/R/bin/Rd2pdf
+lib/R/bin/Rdconv
+lib/R/bin/Rdiff
+lib/R/bin/Rprof
+lib/R/bin/Rscript
+lib/R/bin/SHLIB
+lib/R/bin/Stangle
+lib/R/bin/Sweave
+lib/R/bin/build
+lib/R/bin/check
+lib/R/bin/config
+lib/R/bin/exec/R
+lib/R/bin/javareconf
+lib/R/bin/libtool
+lib/R/bin/mkinstalldirs
+lib/R/bin/pager
+lib/R/bin/rtags
+lib/R/doc/AUTHORS
+lib/R/doc/BioC_mirrors.csv
+lib/R/doc/COPYING
+lib/R/doc/COPYRIGHTS
+lib/R/doc/CRAN_mirrors.csv
+lib/R/doc/FAQ
+lib/R/doc/KEYWORDS
+lib/R/doc/KEYWORDS.db
+lib/R/doc/NEWS
+lib/R/doc/NEWS.0
+lib/R/doc/NEWS.1
+lib/R/doc/NEWS.2
+lib/R/doc/NEWS.2.rds
+lib/R/doc/NEWS.3
+lib/R/doc/NEWS.3.rds
+lib/R/doc/NEWS.pdf
+lib/R/doc/NEWS.rds
+lib/R/doc/RESOURCES
+lib/R/doc/THANKS
+lib/R/doc/html/NEWS.2.html
+lib/R/doc/html/NEWS.3.html
+lib/R/doc/html/NEWS.html
+lib/R/doc/html/R.css
+lib/R/doc/html/Rlogo.pdf
+lib/R/doc/html/Rlogo.svg
+lib/R/doc/html/Search.html
+lib/R/doc/html/SearchOn.html
+lib/R/doc/html/about.html
+lib/R/doc/html/favicon.ico
+lib/R/doc/html/index.html
+lib/R/doc/html/katex-check.js
+lib/R/doc/html/katex-config.js
+lib/R/doc/html/katex/LICENSE
+lib/R/doc/html/katex/README.md
+lib/R/doc/html/katex/fonts/KaTeX_AMS-Regular.ttf
+lib/R/doc/html/katex/fonts/KaTeX_AMS-Regular.woff
+lib/R/doc/html/katex/fonts/KaTeX_AMS-Regular.woff2
+lib/R/doc/html/katex/fonts/KaTeX_Caligraphic-Bold.ttf
+lib/R/doc/html/katex/fonts/KaTeX_Caligraphic-Bold.woff
+lib/R/doc/html/katex/fonts/KaTeX_Caligraphic-Bold.woff2
+lib/R/doc/html/katex/fonts/KaTeX_Caligraphic-Regular.ttf
+lib/R/doc/html/katex/fonts/KaTeX_Caligraphic-Regular.woff
+lib/R/doc/html/katex/fonts/KaTeX_Caligraphic-Regular.woff2
+lib/R/doc/html/katex/fonts/KaTeX_Fraktur-Bold.ttf
+lib/R/doc/html/katex/fonts/KaTeX_Fraktur-Bold.woff
+lib/R/doc/html/katex/fonts/KaTeX_Fraktur-Bold.woff2
+lib/R/doc/html/katex/fonts/KaTeX_Fraktur-Regular.ttf
+lib/R/doc/html/katex/fonts/KaTeX_Fraktur-Regular.woff
+lib/R/doc/html/katex/fonts/KaTeX_Fraktur-Regular.woff2
+lib/R/doc/html/katex/fonts/KaTeX_Main-Bold.ttf
+lib/R/doc/html/katex/fonts/KaTeX_Main-Bold.woff
+lib/R/doc/html/katex/fonts/KaTeX_Main-Bold.woff2
+lib/R/doc/html/katex/fonts/KaTeX_Main-BoldItalic.ttf
+lib/R/doc/html/katex/fonts/KaTeX_Main-BoldItalic.woff
+lib/R/doc/html/katex/fonts/KaTeX_Main-BoldItalic.woff2
+lib/R/doc/html/katex/fonts/KaTeX_Main-Italic.ttf
+lib/R/doc/html/katex/fonts/KaTeX_Main-Italic.woff
+lib/R/doc/html/katex/fonts/KaTeX_Main-Italic.woff2
+lib/R/doc/html/katex/fonts/KaTeX_Main-Regular.ttf
+lib/R/doc/html/katex/fonts/KaTeX_Main-Regular.woff
+lib/R/doc/html/katex/fonts/KaTeX_Main-Regular.woff2
+lib/R/doc/html/katex/fonts/KaTeX_Math-BoldItalic.ttf
+lib/R/doc/html/katex/fonts/KaTeX_Math-BoldItalic.woff
+lib/R/doc/html/katex/fonts/KaTeX_Math-BoldItalic.woff2
+lib/R/doc/html/katex/fonts/KaTeX_Math-Italic.ttf
+lib/R/doc/html/katex/fonts/KaTeX_Math-Italic.woff
+lib/R/doc/html/katex/fonts/KaTeX_Math-Italic.woff2
+lib/R/doc/html/katex/fonts/KaTeX_SansSerif-Bold.ttf
+lib/R/doc/html/katex/fonts/KaTeX_SansSerif-Bold.woff
+lib/R/doc/html/katex/fonts/KaTeX_SansSerif-Bold.woff2
+lib/R/doc/html/katex/fonts/KaTeX_SansSerif-Italic.ttf
+lib/R/doc/html/katex/fonts/KaTeX_SansSerif-Italic.woff
+lib/R/doc/html/katex/fonts/KaTeX_SansSerif-Italic.woff2
+lib/R/doc/html/katex/fonts/KaTeX_SansSerif-Regular.ttf
+lib/R/doc/html/katex/fonts/KaTeX_SansSerif-Regular.woff
+lib/R/doc/html/katex/fonts/KaTeX_SansSerif-Regular.woff2
+lib/R/doc/html/katex/fonts/KaTeX_Script-Regular.ttf
+lib/R/doc/html/katex/fonts/KaTeX_Script-Regular.woff
+lib/R/doc/html/katex/fonts/KaTeX_Script-Regular.woff2
+lib/R/doc/html/katex/fonts/KaTeX_Size1-Regular.ttf
+lib/R/doc/html/katex/fonts/KaTeX_Size1-Regular.woff
+lib/R/doc/html/katex/fonts/KaTeX_Size1-Regular.woff2
+lib/R/doc/html/katex/fonts/KaTeX_Size2-Regular.ttf
+lib/R/doc/html/katex/fonts/KaTeX_Size2-Regular.woff
+lib/R/doc/html/katex/fonts/KaTeX_Size2-Regular.woff2
+lib/R/doc/html/katex/fonts/KaTeX_Size3-Regular.ttf
+lib/R/doc/html/katex/fonts/KaTeX_Size3-Regular.woff
+lib/R/doc/html/katex/fonts/KaTeX_Size3-Regular.woff2
+lib/R/doc/html/katex/fonts/KaTeX_Size4-Regular.ttf
+lib/R/doc/html/katex/fonts/KaTeX_Size4-Regular.woff
+lib/R/doc/html/katex/fonts/KaTeX_Size4-Regular.woff2
+lib/R/doc/html/katex/fonts/KaTeX_Typewriter-Regular.ttf
+lib/R/doc/html/katex/fonts/KaTeX_Typewriter-Regular.woff
+lib/R/doc/html/katex/fonts/KaTeX_Typewriter-Regular.woff2
+lib/R/doc/html/katex/katex.css
+lib/R/doc/html/katex/katex.js
+lib/R/doc/html/left.jpg
+lib/R/doc/html/logo.jpg
+lib/R/doc/html/mathjax-config.js
+lib/R/doc/html/packages-head-utf8.html
+lib/R/doc/html/prism.css
+lib/R/doc/html/prism.js
+lib/R/doc/html/resources.html
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diff --git a/R/PLIST.Darwin b/R/PLIST.Darwin
new file mode 100644
index 0000000000..63f6a47fa4
--- /dev/null
+++ b/R/PLIST.Darwin
@@ -0,0 +1,612 @@
+@comment $NetBSD: PLIST.Darwin,v 1.12 2022/03/23 21:16:44 wiz Exp $
+@comment
+@comment The configure script has explicit check for darwin and sets
+@comment --with-internal-tzcode=yes
+@comment which results in these files in lib/R/share/zoneinfo
+@comment
+@comment This source file:
+@comment https://svn.r-project.org/R/trunk/src/extra/tzone/Notes
+@comment explains that osx has problems stemming from 32 bit limitations in zic.
+@comment Some further discussion found at
+@comment https://github.com/tzinfo/tzinfo-data/issues/1
+@comment
+@comment Even darwin 10.10.3 (osx 14D131) still shows zic --version of 7.116
+@comment
+lib/R/share/zoneinfo/Africa/Abidjan
+lib/R/share/zoneinfo/Africa/Accra
+lib/R/share/zoneinfo/Africa/Addis_Ababa
+lib/R/share/zoneinfo/Africa/Algiers
+lib/R/share/zoneinfo/Africa/Asmara
+lib/R/share/zoneinfo/Africa/Asmera
+lib/R/share/zoneinfo/Africa/Bamako
+lib/R/share/zoneinfo/Africa/Bangui
+lib/R/share/zoneinfo/Africa/Banjul
+lib/R/share/zoneinfo/Africa/Bissau
+lib/R/share/zoneinfo/Africa/Blantyre
+lib/R/share/zoneinfo/Africa/Brazzaville
+lib/R/share/zoneinfo/Africa/Bujumbura
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+lib/R/share/zoneinfo/Africa/Dar_es_Salaam
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+lib/R/share/zoneinfo/Africa/El_Aaiun
+lib/R/share/zoneinfo/Africa/Freetown
+lib/R/share/zoneinfo/Africa/Gaborone
+lib/R/share/zoneinfo/Africa/Harare
+lib/R/share/zoneinfo/Africa/Johannesburg
+lib/R/share/zoneinfo/Africa/Juba
+lib/R/share/zoneinfo/Africa/Kampala
+lib/R/share/zoneinfo/Africa/Khartoum
+lib/R/share/zoneinfo/Africa/Kigali
+lib/R/share/zoneinfo/Africa/Kinshasa
+lib/R/share/zoneinfo/Africa/Lagos
+lib/R/share/zoneinfo/Africa/Libreville
+lib/R/share/zoneinfo/Africa/Lome
+lib/R/share/zoneinfo/Africa/Luanda
+lib/R/share/zoneinfo/Africa/Lubumbashi
+lib/R/share/zoneinfo/Africa/Lusaka
+lib/R/share/zoneinfo/Africa/Malabo
+lib/R/share/zoneinfo/Africa/Maputo
+lib/R/share/zoneinfo/Africa/Maseru
+lib/R/share/zoneinfo/Africa/Mbabane
+lib/R/share/zoneinfo/Africa/Mogadishu
+lib/R/share/zoneinfo/Africa/Monrovia
+lib/R/share/zoneinfo/Africa/Nairobi
+lib/R/share/zoneinfo/Africa/Ndjamena
+lib/R/share/zoneinfo/Africa/Niamey
+lib/R/share/zoneinfo/Africa/Nouakchott
+lib/R/share/zoneinfo/Africa/Ouagadougou
+lib/R/share/zoneinfo/Africa/Porto-Novo
+lib/R/share/zoneinfo/Africa/Sao_Tome
+lib/R/share/zoneinfo/Africa/Timbuktu
+lib/R/share/zoneinfo/Africa/Tripoli
+lib/R/share/zoneinfo/Africa/Tunis
+lib/R/share/zoneinfo/Africa/Windhoek
+lib/R/share/zoneinfo/America/Adak
+lib/R/share/zoneinfo/America/Anchorage
+lib/R/share/zoneinfo/America/Anguilla
+lib/R/share/zoneinfo/America/Antigua
+lib/R/share/zoneinfo/America/Araguaina
+lib/R/share/zoneinfo/America/Argentina/Buenos_Aires
+lib/R/share/zoneinfo/America/Argentina/Catamarca
+lib/R/share/zoneinfo/America/Argentina/ComodRivadavia
+lib/R/share/zoneinfo/America/Argentina/Cordoba
+lib/R/share/zoneinfo/America/Argentina/Jujuy
+lib/R/share/zoneinfo/America/Argentina/La_Rioja
+lib/R/share/zoneinfo/America/Argentina/Mendoza
+lib/R/share/zoneinfo/America/Argentina/Rio_Gallegos
+lib/R/share/zoneinfo/America/Argentina/Salta
+lib/R/share/zoneinfo/America/Argentina/San_Juan
+lib/R/share/zoneinfo/America/Argentina/San_Luis
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+lib/R/share/zoneinfo/Pacific/Kanton
+lib/R/share/zoneinfo/Pacific/Kiritimati
+lib/R/share/zoneinfo/Pacific/Kosrae
+lib/R/share/zoneinfo/Pacific/Kwajalein
+lib/R/share/zoneinfo/Pacific/Majuro
+lib/R/share/zoneinfo/Pacific/Marquesas
+lib/R/share/zoneinfo/Pacific/Midway
+lib/R/share/zoneinfo/Pacific/Nauru
+lib/R/share/zoneinfo/Pacific/Niue
+lib/R/share/zoneinfo/Pacific/Norfolk
+lib/R/share/zoneinfo/Pacific/Noumea
+lib/R/share/zoneinfo/Pacific/Pago_Pago
+lib/R/share/zoneinfo/Pacific/Palau
+lib/R/share/zoneinfo/Pacific/Pitcairn
+lib/R/share/zoneinfo/Pacific/Pohnpei
+lib/R/share/zoneinfo/Pacific/Ponape
+lib/R/share/zoneinfo/Pacific/Port_Moresby
+lib/R/share/zoneinfo/Pacific/Rarotonga
+lib/R/share/zoneinfo/Pacific/Saipan
+lib/R/share/zoneinfo/Pacific/Samoa
+lib/R/share/zoneinfo/Pacific/Tahiti
+lib/R/share/zoneinfo/Pacific/Tarawa
+lib/R/share/zoneinfo/Pacific/Tongatapu
+lib/R/share/zoneinfo/Pacific/Truk
+lib/R/share/zoneinfo/Pacific/Wake
+lib/R/share/zoneinfo/Pacific/Wallis
+lib/R/share/zoneinfo/Pacific/Yap
+lib/R/share/zoneinfo/Poland
+lib/R/share/zoneinfo/Portugal
+lib/R/share/zoneinfo/ROC
+lib/R/share/zoneinfo/ROK
+lib/R/share/zoneinfo/Singapore
+lib/R/share/zoneinfo/Turkey
+lib/R/share/zoneinfo/UCT
+lib/R/share/zoneinfo/US/Alaska
+lib/R/share/zoneinfo/US/Aleutian
+lib/R/share/zoneinfo/US/Arizona
+lib/R/share/zoneinfo/US/Central
+lib/R/share/zoneinfo/US/East-Indiana
+lib/R/share/zoneinfo/US/Eastern
+lib/R/share/zoneinfo/US/Hawaii
+lib/R/share/zoneinfo/US/Indiana-Starke
+lib/R/share/zoneinfo/US/Michigan
+lib/R/share/zoneinfo/US/Mountain
+lib/R/share/zoneinfo/US/Pacific
+lib/R/share/zoneinfo/US/Samoa
+lib/R/share/zoneinfo/UTC
+lib/R/share/zoneinfo/Universal
+lib/R/share/zoneinfo/VERSION
+lib/R/share/zoneinfo/W-SU
+lib/R/share/zoneinfo/WET
+lib/R/share/zoneinfo/Zulu
+lib/R/share/zoneinfo/iso3166.tab
+lib/R/share/zoneinfo/zone.tab
+lib/R/share/zoneinfo/zone1970.tab
diff --git a/R/buildlink3.mk b/R/buildlink3.mk
new file mode 100644
index 0000000000..c512b1330f
--- /dev/null
+++ b/R/buildlink3.mk
@@ -0,0 +1,22 @@
+# $NetBSD: buildlink3.mk,v 1.17 2023/01/20 17:45:49 he Exp $
+
+BUILDLINK_TREE+= R
+
+.if !defined(R_BUILDLINK3_MK)
+R_BUILDLINK3_MK:=
+
+BUILDLINK_API_DEPENDS.R+= R>=1.7.0
+BUILDLINK_ABI_DEPENDS.R+= R>=4.2.0nb1
+BUILDLINK_PKGSRCDIR.R?= ../../math/R
+
+.include "../../archivers/bzip2/buildlink3.mk"
+.include "../../archivers/xz/buildlink3.mk"
+.include "../../devel/gettext-lib/buildlink3.mk"
+.include "../../devel/zlib/buildlink3.mk"
+.if !exists(/System/Library/Frameworks/Accelerate.framework)
+.include "../../mk/blas.buildlink3.mk"
+.endif
+.include "../../mk/atomic64.mk"
+.endif # R_BUILDLINK3_MK
+
+BUILDLINK_TREE+= -R
diff --git a/R/distinfo b/R/distinfo
new file mode 100644
index 0000000000..773a9d9bbd
--- /dev/null
+++ b/R/distinfo
@@ -0,0 +1,9 @@
+$NetBSD: distinfo,v 1.97 2023/03/22 13:53:29 wiz Exp $
+
+BLAKE2s (R-4.3.1.tar.gz) = ec3d8b86a707169e2fb65d8bf455f6f57e13385a4c4712d08a5053e13c9a4f7c
+SHA512 (R-4.3.1.tar.gz) = f571c378dbdd675e267ef4419bb1141198924dadc08297c93c8dff58504994604918b3e045bb7139ba473972a063a68ed1c7426f37d4e8208b79358561d34d77
+Size (R-4.3.1.tar.gz) = 34899964 bytes
+SHA1 (patch-configure.ac) = 56a92d2d75ecdad45c06ca05ebc260af83a5a0ea
+SHA1 (patch-m4_R.m4) = 76a280dc2aeea2eb0e473ae770f636d00314d68a
+SHA1 (patch-src_library_stats_src_Makefile.in) = 4eb93292858392792c37a706399e2cef91821bbe
+SHA1 (patch-src_main_character.c) = 842ae5d291f36f2beead4d32c1d41b18cbff878d
diff --git a/R/files/pkg-index.tmpl b/R/files/pkg-index.tmpl
new file mode 100644
index 0000000000..494ee88882
--- /dev/null
+++ b/R/files/pkg-index.tmpl
@@ -0,0 +1,26 @@
+# $NetBSD: pkg-index.tmpl,v 1.3 2011/11/20 04:57:03 markd Exp $
+#
+# Rebuild R package indices upon installation or deinstallation of an
+# R extension.
+#
+
+rebuild_R_pkg_indices()
+{
+ ${ECHO} "${PKGNAME}: rebuilding R package indices and help files"
+ R CMD ${PERL5} ${PKG_PREFIX}/lib/R/share/perl/build-help.pl \
+ --htmllists 2>/dev/null
+}
+
+case ${STAGE} in
+POST-INSTALL)
+ rebuild_R_pkg_indices
+ ;;
+DEINSTALL)
+ if [ "${PKGBASE}" = "R" ] ; then
+ ${RM} -f ${PKG_PREFIX}/lib/R/doc/html/packages.html
+ fi
+ ;;
+POST-DEINSTALL)
+ [ "${PKGBASE}" = "R" ] || rebuild_R_pkg_indices
+ ;;
+esac
diff --git a/R/patches/patch-configure.ac b/R/patches/patch-configure.ac
new file mode 100644
index 0000000000..dcfac9548d
--- /dev/null
+++ b/R/patches/patch-configure.ac
@@ -0,0 +1,112 @@
+$NetBSD: patch-configure.ac,v 1.6 2022/03/23 21:16:44 wiz Exp $
+
+Do not include system paths in R_LD_LIBRARY_PATH.
+NetBSD, FreeBSD, DragonFly, Darwin and Solaris fixes
+
+--- configure.ac.orig 2023-05-02 07:15:02.000000000 +0900
++++ configure.ac 2023-07-06 20:38:40.845664139 +0900
+@@ -33,6 +33,7 @@ m4_define([R_VERSION],
+ AC_INIT([R],[R_VERSION],[https://bugs.r-project.org],[R],[https://www.r-project.org])
+ AC_CONFIG_SRCDIR([src/include/Defn.h])
+ AC_CONFIG_AUX_DIR([tools])
++AC_CONFIG_MACRO_DIR([m4])
+
+ ### * Information on the package.
+
+@@ -311,7 +312,7 @@ AC_ARG_ENABLE([BLAS-shlib],
+
+ ## As from R 3.2.0 split up -L... and -lR
+ if test "${want_R_shlib}" = yes; then
+- LIBR0="-L\"\$(R_HOME)/lib\$(R_ARCH)\""
++ LIBR0="@COMPILER_RPATH_FLAG@${prefix}/lib/R/lib\$(R_ARCH) -L\"\$(R_HOME)/lib\$(R_ARCH)\""
+ LIBR1=-lR
+ else
+ LIBR0=
+@@ -894,7 +895,7 @@ case "${host_os}" in
+ ## Not so bad in later versions of Darwin,
+ ## where DYLD_FALLBACK_LIBRARY_PATH is used (see below).
+ ;;
+- *)
++ donotuse*)
+ for arg in ${LDFLAGS}; do
+ case "${arg}" in
+ -L*)
+@@ -1530,7 +1531,7 @@ rm -f libconftest${DYLIB_EXT} conftest.c
+ fpicflags="${darwin_pic}"
+ shlib_cxxldflags="${shlib_ldflags}"
+ ;;
+- freebsd*)
++ freebsd*|dragonfly*)
+ ## maybe this needs to depend on the compiler:
+ ## -export-dynamic used to work, but does not with clang.
+ ## Seems FreeBSD has used the GNU linker since at least 3.0 (Oct 1998)
+@@ -1619,6 +1620,12 @@ dnl ;;
+ ;;
+ netbsd*)
+ ## See the comments about FreeBSD
++ fpicflags="-fPIC"
++ case "${host_cpu}" in
++ powerpc*)
++ cpicflags="-fPIC"
++ ;;
++ esac
+ if ${CPP} - -dM < /dev/null | grep __ELF__ >/dev/null ; then
+ main_ldflags="-Wl,--export-dynamic"
+ shlib_ldflags="-shared"
+@@ -1655,22 +1662,22 @@ dnl ;;
+ solaris*)
+ ## SPARC has only an 8k global object table, 1024 entries on 64-bit,
+ ## so need PIC not pic. They are the same on other Solaris platforms.
+- shlib_ldflags="-G"
+- shlib_cxxldflags="-G"
+ if test "${GCC}" = yes; then
++ shlib_ldflags="-shared"
++ shlib_cxxldflags="-shared"
+ cpicflags="-fPIC"
+ ld=`${CC} -print-prog-name=ld`
+ ldoutput=`${ld} -v 2>&1 | grep GNU`
+ if test -n "${ldoutput}"; then
+ main_ldflags="-Wl,-export-dynamic"
+- shlib_ldflags="-shared"
+- shlib_cxxldflags="-shared"
+ else
+ ## it seems gcc c 4.6.2 needs this with Solaris linker
+ shlib_ldflags="-shared"
+ shlib_cxxldflags="-shared"
+ fi
+ else
++ shlib_ldflags="-G"
++ shlib_cxxldflags="-G"
+ cpicflags="-KPIC"
+ if test "`basename ${CXX}`" = "CC" ; then
+ ## Forte version 7 needs -lCstd: Forte 6 does not.
+@@ -1749,7 +1756,7 @@ fi
+ : ${CXXPICFLAGS="${cxxpicflags}"}
+ if test -n "${CXX}" -a -z "${CXXPICFLAGS}"; then
+ case "${host_os}" in
+- aix*|mingw*|msys)
++ aix*|mingw*|msys|darwin*)
+ ;;
+ *)
+ warn_cxxpicflags="I could not determine CXXPICFLAGS."
+@@ -1809,8 +1816,10 @@ dnl ;;
+ MAJR_VERSION=`echo "${PACKAGE_VERSION}" | sed -e "s/[[\.]][[1-9]]$/.0/"`
+ LIBR_LDFLAGS="-install_name libR.dylib -compatibility_version ${MAJR_VERSION} -current_version ${PACKAGE_VERSION} -headerpad_max_install_names"
+ RLAPACK_LDFLAGS="-install_name libRlapack.dylib -compatibility_version ${MAJR_VERSION} -current_version ${PACKAGE_VERSION} -headerpad_max_install_names"
++ LIBR_LDFLAGS="-install_name ${PREFIX}/lib/R/lib/libR.dylib -compatibility_version ${MAJR_VERSION} -current_version ${PACKAGE_VERSION} -headerpad_max_install_names"
++ RLAPACK_LDFLAGS="-install_name ${PREFIX}/lib/R/lib/libRlapack.dylib -compatibility_version ${MAJR_VERSION} -current_version ${PACKAGE_VERSION} -headerpad_max_install_names"
+ ## don't use version in libRblas so we can replace it with any BLAS implementation
+- RBLAS_LDFLAGS="-install_name libRblas.dylib -headerpad_max_install_names"
++ RBLAS_LDFLAGS="-install_name ${PREFIX}/lib/R/lib/libRblas.dylib -headerpad_max_install_names"
+ ;;
+ dnl hpux*)
+ dnl ## Needs to avoid embedding a relative path ../../../bin.
+@@ -2803,7 +2812,7 @@ case "${host_os}" in
+ r_ld_library_defaults="/usr/lib64:/lib64:/usr/lib:/lib"
+ ;;
+ solaris*)
+- r_ld_library_defaults="/usr/lib:/lib"
++ r_ld_library_defaults="/usr/lib:/lib:/usr/lib/amd64:/lib/amd64:/usr/lib/64:/lib/64"
+ ;;
+ *)
+ r_ld_library_defaults=
diff --git a/R/patches/patch-m4_R.m4 b/R/patches/patch-m4_R.m4
new file mode 100644
index 0000000000..97f87e7141
--- /dev/null
+++ b/R/patches/patch-m4_R.m4
@@ -0,0 +1,60 @@
+$NetBSD: patch-m4_R.m4,v 1.2 2023/03/22 13:53:29 wiz Exp $
+
+Ensure tests for clog & co. fail, not just emit warning
+
+--- m4/R.m4.orig 2023-04-05 07:15:01.000000000 +0900
++++ m4/R.m4 2023-07-06 20:34:53.656339598 +0900
+@@ -225,7 +225,7 @@ if test -z "${texi2any_version_maj}" \
+ elif test ${texi2any_version_maj} -gt 5; then
+ r_cv_prog_texi2any_v5=yes
+ elif test ${texi2any_version_maj} -lt 5 \
+- || test ${texi2any_version_min} -lt 1; then
++ || test ${texi2any_version_maj} = 5 -a ${texi2any_version_min} -lt 1; then
+ r_cv_prog_texi2any_v5=no
+ else
+ r_cv_prog_texi2any_v5=yes
+@@ -904,6 +904,9 @@ dnl Yes we need to double quote this ...
+
+ extern void F77_SYMBOL(cftest)(int *a, int *b, double *x, double *y);
+
++int MAIN_ () { return 0; }
++int MAIN__ () { return 0; }
++
+ int main () {
+ int a[3] = {17, 237, 2000000000}, b[2], res = 0;
+ double x[3] = {3.14159265, 123.456789, 2.3e34}, z[3];
+@@ -999,6 +1002,9 @@ typedef union {
+
+ extern void F77_SYMBOL(cftest)(Rcomplex *x);
+
++int MAIN_ () { return 0; }
++int MAIN__ () { return 0; }
++
+ int main () {
+ Rcomplex z[3];
+
+@@ -3857,9 +3863,9 @@ R_CHECK_FUNCS([cabs carg cexp clog csqrt
+ AC_DEFUN([R_CHECK_DECL],
+ [AS_VAR_PUSHDEF([ac_Symbol], [ac_cv_have_decl_$1])dnl
+ AC_CACHE_CHECK([whether $1 exists and is declared], ac_Symbol,
+-[AC_LINK_IFELSE([AC_LANG_PROGRAM([AC_INCLUDES_DEFAULT([$4])],
+-[#ifndef $1
+- char *p = (char *) $1;
++[AC_LINK_IFELSE([AC_LANG_PROGRAM([AC_INCLUDES_DEFAULT([$4])
++#ifndef $1
++char *p = (char *) $1;
+ #endif
+ ])],
+ [AS_VAR_SET(ac_Symbol, yes)],
+@@ -4630,9 +4636,9 @@ AC_CACHE_CHECK([if libcurl is >= 7.28.0]
+ int main(void)
+ {
+ #ifdef LIBCURL_VERSION_MAJOR
+-#if LIBCURL_VERSION_MAJOR > 7
++#if LIBCURL_VERSION_MAJOR > 8
+ exit(0);
+-#elif LIBCURL_VERSION_MAJOR == 7 && LIBCURL_VERSION_MINOR >= 28
++#elif (LIBCURL_VERSION_MAJOR == 7 && LIBCURL_VERSION_MINOR >= 28) || LIBCURL_VERSION_MAJOR == 8
+ exit(0);
+ #else
+ exit(1);
diff --git a/R/patches/patch-src_library_stats_src_Makefile.in b/R/patches/patch-src_library_stats_src_Makefile.in
new file mode 100644
index 0000000000..9847dd8424
--- /dev/null
+++ b/R/patches/patch-src_library_stats_src_Makefile.in
@@ -0,0 +1,14 @@
+$NetBSD: patch-src_library_stats_src_Makefile.in,v 1.2 2016/07/26 04:53:33 wen Exp $
+
+${R_INCLUDE_DIR} is used in the default compiler flags.
+
+--- src/library/stats/src/Makefile.in.orig 2016-07-26 01:57:49.000000000 +0000
++++ src/library/stats/src/Makefile.in
+@@ -10,6 +10,7 @@ top_srcdir = @top_srcdir@
+ top_builddir = ../../../..
+ subdir = src/library/$(pkg)/src
+ R_HOME = $(top_builddir)
++R_INCLUDE_DIR = $(R_HOME)/include
+ ## for $(R_HOME)/etc${R_ARCH}/Makeconf
+ R_SHARE_DIR = $(R_HOME)/share
+ R_INCLUDE_DIR = $(R_HOME)/include
diff --git a/R/patches/patch-src_main_character.c b/R/patches/patch-src_main_character.c
new file mode 100644
index 0000000000..423b8c46d1
--- /dev/null
+++ b/R/patches/patch-src_main_character.c
@@ -0,0 +1,22 @@
+$NetBSD: patch-src_main_character.c,v 1.5 2021/06/13 13:10:47 wen Exp $
+
+--- src/main/character.c.orig 2021-06-13 06:56:55.454092033 +0000
++++ src/main/character.c
+@@ -1744,7 +1744,7 @@ SEXP attribute_hidden do_strtrim(SEXP ca
+ return s;
+ }
+
+-static int strtoi(SEXP s, int base)
++static int my_strtoi(SEXP s, int base)
+ {
+ if(s == NA_STRING || CHAR(s)[0] == '\0') return(NA_INTEGER);
+
+@@ -1777,7 +1777,7 @@ SEXP attribute_hidden do_strtoi(SEXP cal
+
+ PROTECT(ans = allocVector(INTSXP, n = LENGTH(x)));
+ for(i = 0; i < n; i++)
+- INTEGER(ans)[i] = strtoi(STRING_ELT(x, i), base);
++ INTEGER(ans)[i] = my_strtoi(STRING_ELT(x, i), base);
+ UNPROTECT(1);
+
+ return ans;
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