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rna-seq: Add curl to simplify pipeline scripts
Module Name: pkgsrc-wip
Committed By: Jason W. Bacon <bacon%NetBSD.org@localhost>
Pushed By: outpaddling
Date: Tue Jul 25 12:24:17 2023 -0500
Changeset: 3cecd0ef24aa1e9df3cea64864664eed260d15c7
Modified Files:
rna-seq/Makefile
Log Message:
rna-seq: Add curl to simplify pipeline scripts
To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=3cecd0ef24aa1e9df3cea64864664eed260d15c7
Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.
diffstat:
rna-seq/Makefile | 23 ++++++++++++-----------
1 file changed, 12 insertions(+), 11 deletions(-)
diffs:
diff --git a/rna-seq/Makefile b/rna-seq/Makefile
index f3c11a9569..c801a61adf 100644
--- a/rna-seq/Makefile
+++ b/rna-seq/Makefile
@@ -1,24 +1,25 @@
# $NetBSD$
#
-DISTNAME= rna-seq-1.2
+DISTNAME= rna-seq-1.2.1
CATEGORIES= biology meta-pkgs
MASTER_SITES= # empty
OWNER= bacon%NetBSD.org@localhost
COMMENT= Core tools needed for RNA-Seq analysis
-DEPENDS+= fastq-trim>=0:../../wip/fastq-trim
-DEPENDS+= fastqc>=0:../../biology/fastqc
-DEPENDS+= biolibc-tools>=0:../../wip/biolibc-tools
-DEPENDS+= gffread>=0:../../biology/gffread
-DEPENDS+= kallisto>=0:../../biology/kallisto
-DEPENDS+= hisat2>=0:../../biology/hisat2
-DEPENDS+= samtools>=0:../../biology/samtools
-DEPENDS+= igv>=0:../../biology/igv
-DEPENDS+= fasda>=0:../../wip/fasda
-DEPENDS+= webbrowser>=0:../../wip/webbrowser
+DEPENDS+= fastq-trim>0:../../wip/fastq-trim
+DEPENDS+= fastqc>0:../../biology/fastqc
+DEPENDS+= biolibc-tools>0:../../wip/biolibc-tools
+DEPENDS+= gffread>0:../../biology/gffread
+DEPENDS+= kallisto>0:../../biology/kallisto
+DEPENDS+= hisat2>0:../../biology/hisat2
+DEPENDS+= samtools>0:../../biology/samtools
+DEPENDS+= igv>0:../../biology/igv
+DEPENDS+= fasda>0:../../wip/fasda
DEPENDS+= ${PYPKGPREFIX}-multiqc-[0-9]*:../../wip/py-multiqc
+DEPENDS+= webbrowser>0:../../wip/webbrowser
+DEPENDS+= curl>0:../../www/curl
META_PACKAGE= yes
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