biolibc: Update to 0.2.4.7

[Jason W. Bacon <bacon%NetBSD.org@localhost>]

Module Name:	pkgsrc-wip
Committed By:	Jason W. Bacon <bacon%NetBSD.org@localhost>
Pushed By:	outpaddling
Date:		Fri Aug 4 11:59:52 2023 -0500
Changeset:	83fbb5b77c3f0904550cc680f0b95243ab8961d7

Modified Files:
	biolibc/Makefile
	biolibc/PLIST
	biolibc/buildlink3.mk
	biolibc/distinfo

Log Message:
biolibc: Update to 0.2.4.7

Rename all gff objects to gff3 to avoid ambiguity with other versions

To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=83fbb5b77c3f0904550cc680f0b95243ab8961d7

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

diffstat:
 biolibc/Makefile      |   4 +-
 biolibc/PLIST         | 126 +++++++++++++++++++++++++-------------------------
 biolibc/buildlink3.mk |   2 +-
 biolibc/distinfo      |   6 +--
 4 files changed, 69 insertions(+), 69 deletions(-)

diffs:
diff --git a/biolibc/Makefile b/biolibc/Makefile
index 364b853cee..b2f660abd7 100644
--- a/biolibc/Makefile
+++ b/biolibc/Makefile
@@ -1,9 +1,9 @@
 # $NetBSD$
 
-DISTNAME=	biolibc-0.2.4.5
+DISTNAME=	biolibc-0.2.4.7
 CATEGORIES=	biology
 MASTER_SITES=	${MASTER_SITE_GITHUB:=auerlab/}
-GITHUB_TAG=	479d47d834f5a220550114f951f373b7ed448888
+GITHUB_TAG=	cb93a856f540bc466ed77951d4eb9b32bac3047a
 
 OWNER=		bacon%NetBSD.org@localhost
 HOMEPAGE=	https://github.com/auerlab/biolibc
diff --git a/biolibc/PLIST b/biolibc/PLIST
index 52d0648646..22332d5eec 100644
--- a/biolibc/PLIST
+++ b/biolibc/PLIST
@@ -21,14 +21,14 @@ include/biolibc/fastx-accessors.h
 include/biolibc/fastx-mutators.h
 include/biolibc/fastx-rvs.h
 include/biolibc/fastx.h
-include/biolibc/gff-accessors.h
-include/biolibc/gff-index-accessors.h
-include/biolibc/gff-index-mutators.h
-include/biolibc/gff-index-rvs.h
-include/biolibc/gff-index.h
-include/biolibc/gff-mutators.h
-include/biolibc/gff-rvs.h
-include/biolibc/gff.h
+include/biolibc/gff3-accessors.h
+include/biolibc/gff3-index-accessors.h
+include/biolibc/gff3-index-mutators.h
+include/biolibc/gff3-index-rvs.h
+include/biolibc/gff3-index.h
+include/biolibc/gff3-mutators.h
+include/biolibc/gff3-rvs.h
+include/biolibc/gff3.h
 include/biolibc/overlap-accessors.h
 include/biolibc/overlap-mutators.h
 include/biolibc/overlap-rvs.h
@@ -322,61 +322,61 @@ man/man3/bl_fastx_set_fasta.3
 man/man3/bl_fastx_set_fastq.3
 man/man3/bl_fastx_set_format.3
 man/man3/bl_fastx_write.3
-man/man3/bl_gff_copy.3
-man/man3/bl_gff_copy_header.3
-man/man3/bl_gff_dup.3
-man/man3/bl_gff_extract_attribute.3
-man/man3/bl_gff_free.3
-man/man3/bl_gff_index_add.3
-man/man3/bl_gff_index_seek_reverse.3
-man/man3/bl_gff_index_set_array_size.3
-man/man3/bl_gff_index_set_count.3
-man/man3/bl_gff_index_set_end.3
-man/man3/bl_gff_index_set_end_ae.3
-man/man3/bl_gff_index_set_end_cpy.3
-man/man3/bl_gff_index_set_file_pos.3
-man/man3/bl_gff_index_set_file_pos_ae.3
-man/man3/bl_gff_index_set_file_pos_cpy.3
-man/man3/bl_gff_index_set_seqid.3
-man/man3/bl_gff_index_set_seqid_ae.3
-man/man3/bl_gff_index_set_seqid_cpy.3
-man/man3/bl_gff_index_set_start.3
-man/man3/bl_gff_index_set_start_ae.3
-man/man3/bl_gff_index_set_start_cpy.3
-man/man3/bl_gff_init.3
-man/man3/bl_gff_read.3
-man/man3/bl_gff_sam_cmp.3
-man/man3/bl_gff_sam_overlap.3
-man/man3/bl_gff_set_attributes.3
-man/man3/bl_gff_set_attributes_ae.3
-man/man3/bl_gff_set_attributes_array_size.3
-man/man3/bl_gff_set_attributes_cpy.3
-man/man3/bl_gff_set_attributes_len.3
-man/man3/bl_gff_set_end.3
-man/man3/bl_gff_set_feature_id.3
-man/man3/bl_gff_set_feature_id_ae.3
-man/man3/bl_gff_set_feature_id_cpy.3
-man/man3/bl_gff_set_feature_name.3
-man/man3/bl_gff_set_feature_name_ae.3
-man/man3/bl_gff_set_feature_name_cpy.3
-man/man3/bl_gff_set_feature_parent.3
-man/man3/bl_gff_set_feature_parent_ae.3
-man/man3/bl_gff_set_feature_parent_cpy.3
-man/man3/bl_gff_set_file_pos.3
-man/man3/bl_gff_set_gene_name_cpy.3
-man/man3/bl_gff_set_phase.3
-man/man3/bl_gff_set_score.3
-man/man3/bl_gff_set_seqid_ae.3
-man/man3/bl_gff_set_seqid_cpy.3
-man/man3/bl_gff_set_source_ae.3
-man/man3/bl_gff_set_source_cpy.3
-man/man3/bl_gff_set_start.3
-man/man3/bl_gff_set_strand.3
-man/man3/bl_gff_set_type_ae.3
-man/man3/bl_gff_set_type_cpy.3
-man/man3/bl_gff_skip_header.3
-man/man3/bl_gff_to_bed.3
-man/man3/bl_gff_write.3
+man/man3/bl_gff3_copy.3
+man/man3/bl_gff3_copy_header.3
+man/man3/bl_gff3_dup.3
+man/man3/bl_gff3_extract_attribute.3
+man/man3/bl_gff3_free.3
+man/man3/bl_gff3_index_add.3
+man/man3/bl_gff3_index_seek_reverse.3
+man/man3/bl_gff3_index_set_array_size.3
+man/man3/bl_gff3_index_set_count.3
+man/man3/bl_gff3_index_set_end.3
+man/man3/bl_gff3_index_set_end_ae.3
+man/man3/bl_gff3_index_set_end_cpy.3
+man/man3/bl_gff3_index_set_file_pos.3
+man/man3/bl_gff3_index_set_file_pos_ae.3
+man/man3/bl_gff3_index_set_file_pos_cpy.3
+man/man3/bl_gff3_index_set_seqid.3
+man/man3/bl_gff3_index_set_seqid_ae.3
+man/man3/bl_gff3_index_set_seqid_cpy.3
+man/man3/bl_gff3_index_set_start.3
+man/man3/bl_gff3_index_set_start_ae.3
+man/man3/bl_gff3_index_set_start_cpy.3
+man/man3/bl_gff3_init.3
+man/man3/bl_gff3_read.3
+man/man3/bl_gff3_sam_cmp.3
+man/man3/bl_gff3_sam_overlap.3
+man/man3/bl_gff3_set_attributes.3
+man/man3/bl_gff3_set_attributes_ae.3
+man/man3/bl_gff3_set_attributes_array_size.3
+man/man3/bl_gff3_set_attributes_cpy.3
+man/man3/bl_gff3_set_attributes_len.3
+man/man3/bl_gff3_set_end.3
+man/man3/bl_gff3_set_feature_id.3
+man/man3/bl_gff3_set_feature_id_ae.3
+man/man3/bl_gff3_set_feature_id_cpy.3
+man/man3/bl_gff3_set_feature_name.3
+man/man3/bl_gff3_set_feature_name_ae.3
+man/man3/bl_gff3_set_feature_name_cpy.3
+man/man3/bl_gff3_set_feature_parent.3
+man/man3/bl_gff3_set_feature_parent_ae.3
+man/man3/bl_gff3_set_feature_parent_cpy.3
+man/man3/bl_gff3_set_file_pos.3
+man/man3/bl_gff3_set_gene_name_cpy.3
+man/man3/bl_gff3_set_phase.3
+man/man3/bl_gff3_set_score.3
+man/man3/bl_gff3_set_seqid_ae.3
+man/man3/bl_gff3_set_seqid_cpy.3
+man/man3/bl_gff3_set_source_ae.3
+man/man3/bl_gff3_set_source_cpy.3
+man/man3/bl_gff3_set_start.3
+man/man3/bl_gff3_set_strand.3
+man/man3/bl_gff3_set_type_ae.3
+man/man3/bl_gff3_set_type_cpy.3
+man/man3/bl_gff3_skip_header.3
+man/man3/bl_gff3_to_bed.3
+man/man3/bl_gff3_write.3
 man/man3/bl_next_start_codon.3
 man/man3/bl_next_stop_codon.3
 man/man3/bl_overlap_print.3
diff --git a/biolibc/buildlink3.mk b/biolibc/buildlink3.mk
index d0e1545324..39c43f3654 100644
--- a/biolibc/buildlink3.mk
+++ b/biolibc/buildlink3.mk
@@ -5,7 +5,7 @@ BUILDLINK_TREE+=	biolibc
 .if !defined(BIOLIBC_BUILDLINK3_MK)
 BIOLIBC_BUILDLINK3_MK:=
 
-BUILDLINK_API_DEPENDS.biolibc+=	biolibc>=0.2.4.5
+BUILDLINK_API_DEPENDS.biolibc+=	biolibc>=0.2.4.7
 BUILDLINK_PKGSRCDIR.biolibc?=	../../wip/biolibc
 
 .include "../../wip/libxtend/buildlink3.mk"
diff --git a/biolibc/distinfo b/biolibc/distinfo
index 280d8d78ca..5e368cad66 100644
--- a/biolibc/distinfo
+++ b/biolibc/distinfo
@@ -1,5 +1,5 @@
 $NetBSD$
 
-BLAKE2s (biolibc-0.2.4.5-479d47d834f5a220550114f951f373b7ed448888.tar.gz) = 72ba6cc63f3a94c2a631335c492020c005a763ab6facba8f3e05a56849585cf8
-SHA512 (biolibc-0.2.4.5-479d47d834f5a220550114f951f373b7ed448888.tar.gz) = 346e6f57d8ab30943c9c2f64da4f1f9cb718823a53714e78dc7fa204abcb9f04da17568626dbb10ec7f04b26f37e6cc9a9eae7cbafa1f4c0f10467033f2277d4
-Size (biolibc-0.2.4.5-479d47d834f5a220550114f951f373b7ed448888.tar.gz) = 141409 bytes
+BLAKE2s (biolibc-0.2.4.7-cb93a856f540bc466ed77951d4eb9b32bac3047a.tar.gz) = ba65bb7f665b875c09dc7ca66e6a7558ab736577a544542cfe52dbe0895a1960
+SHA512 (biolibc-0.2.4.7-cb93a856f540bc466ed77951d4eb9b32bac3047a.tar.gz) = f480138fd506fd6c95481ae97d70c2206debbb0e7870317177a54e7bc914239c945bfe8b673326135ef5d3b1acf36bc194ae8a909bab66b557d017e6953496e8
+Size (biolibc-0.2.4.7-cb93a856f540bc466ed77951d4eb9b32bac3047a.tar.gz) = 141494 bytes