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atac-seq: Add py-macs3 dep to metapackage
Module Name: pkgsrc-wip
Committed By: Jason W. Bacon <bacon%NetBSD.org@localhost>
Pushed By: outpaddling
Date: Wed Jan 10 10:03:04 2024 -0600
Changeset: 4a6be708130edc6e01fdebb97b09b9610d46cb35
Modified Files:
atac-seq/DESCR
atac-seq/Makefile
Log Message:
atac-seq: Add py-macs3 dep to metapackage
To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=4a6be708130edc6e01fdebb97b09b9610d46cb35
Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.
diffstat:
atac-seq/DESCR | 11 ++++++-----
atac-seq/Makefile | 3 ++-
2 files changed, 8 insertions(+), 6 deletions(-)
diffs:
diff --git a/atac-seq/DESCR b/atac-seq/DESCR
index db4c38bb11..286ab0c22e 100644
--- a/atac-seq/DESCR
+++ b/atac-seq/DESCR
@@ -1,5 +1,6 @@
-The atac-seq meta-package provides the core tools needed for performing
-a typical ATAC-Seq differential accessibility analysis, including
-adapter trimming, quality control, alignment, peak calling, and
-identification of differentially accessible peaks. Researchers may
-want additional tools for data manipulation, gene ontology, etc.
+The atac-seq meta-package provides the core tools needed for
+performing a typical ATAC-Seq differential accessibility analysis,
+including adapter trimming, quality control, alignment, peak calling,
+and identification of differentially accessible peaks. Researchers
+may want additional tools for data manipulation, gene ontology,
+etc.
diff --git a/atac-seq/Makefile b/atac-seq/Makefile
index 4bdbc0c7a9..5c066173d5 100644
--- a/atac-seq/Makefile
+++ b/atac-seq/Makefile
@@ -3,7 +3,7 @@
# Update minor version when adding or removing dependencies
# Update revision for all other changes
-DISTNAME= atac-seq-1.3
+DISTNAME= atac-seq-1.4
CATEGORIES= biology meta-pkgs
MASTER_SITES= # empty
@@ -20,6 +20,7 @@ DEPENDS+= bowtie2>0:../../biology/bowtie2
DEPENDS+= samtools>0:../../biology/samtools
DEPENDS+= igv>0:../../biology/igv
DEPENDS+= ${PYPKGPREFIX}-macs2>0:../../wip/py-macs2
+DEPENDS+= ${PYPKGPREFIX}-macs3>0:../../wip/py-macs3
DEPENDS+= fasda>0:../../wip/fasda
DEPENDS+= peak-classifier>0:../../wip/peak-classifier
DEPENDS+= ${PYPKGPREFIX}-multiqc-[0-9]*:../../wip/py-multiqc
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