fasttree: Update to 2.1.11

[Jason W. Bacon (via pkgsrc-wip) <commit-notify%pkgsrc.org@localhost>]

Module Name:	pkgsrc-wip
Committed By:	Jason W. Bacon <bacon%NetBSD.org@localhost>
Pushed By:	outpaddling
Date:		Tue Dec 3 08:59:12 2024 -0600
Changeset:	e21e81c829787c8b2608259ac83141e4c3e7ead7

Modified Files:
	fasttree/Makefile
	fasttree/distinfo
Added Files:
	fasttree/patches/patch-FastTree-2.1.11.c

Log Message:
fasttree: Update to 2.1.11

To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=e21e81c829787c8b2608259ac83141e4c3e7ead7

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

diffstat:
 fasttree/Makefile                        |  4 +---
 fasttree/distinfo                        |  7 ++++---
 fasttree/patches/patch-FastTree-2.1.11.c | 15 +++++++++++++++
 3 files changed, 20 insertions(+), 6 deletions(-)

diffs:
diff --git a/fasttree/Makefile b/fasttree/Makefile
index 33f003a5cc..3ea0fa10a0 100644
--- a/fasttree/Makefile
+++ b/fasttree/Makefile
@@ -5,7 +5,7 @@
 #              Tue Jan 16 21:48:02 CST 2018               #
 ###########################################################
 
-DISTNAME=	FastTree-${PORTVERSION}
+DISTNAME=	FastTree-2.1.11
 CATEGORIES=	biology
 MASTER_SITES=	http://www.microbesonline.org/fasttree/
 EXTRACT_SUFX=	.c
@@ -19,8 +19,6 @@ WRKSRC=		${WRKDIR}
 
 CFLAGS=		-fopenmp -DNO_SSE
 
-PORTVERSION=	2.1.10
-
 INSTALLATION_DIRS=	bin
 
 do-extract:
diff --git a/fasttree/distinfo b/fasttree/distinfo
index 68906af920..f9cd4efef0 100644
--- a/fasttree/distinfo
+++ b/fasttree/distinfo
@@ -1,5 +1,6 @@
 $NetBSD$
 
-RMD160 (FastTree-2.1.10.c) = b9ba60c1c237e576086b163ed426f602dd34832d
-SHA512 (FastTree-2.1.10.c) = 36dcb8103c78cedf8432c5c1f47229290de41ef3099fe57e7f5c4facb657b43c85e99b5a576fa510f6245523643df2a428baf77c1118f60cfad77635919a39c1
-Size (FastTree-2.1.10.c) = 390916 bytes
+BLAKE2s (FastTree-2.1.11.c) = 276512fabf950e9c592f2ca750e2bb0054b8970a997a5751b38f878b7b6a6d34
+SHA512 (FastTree-2.1.11.c) = 2bbb1cc078b04125a55b8c02f65c9fbfb6db894c2fbfdaac8f86cc0084f2579723cdc4f6aa63bf4338b767d0fdaffa8dd503e4126c3f5f700d4f3da9fc085ee5
+Size (FastTree-2.1.11.c) = 395543 bytes
+SHA1 (patch-FastTree-2.1.11.c) = 58b86d03fbc5b535503580222f91b1c1fc12b593
diff --git a/fasttree/patches/patch-FastTree-2.1.11.c b/fasttree/patches/patch-FastTree-2.1.11.c
new file mode 100644
index 0000000000..e649ab5be2
--- /dev/null
+++ b/fasttree/patches/patch-FastTree-2.1.11.c
@@ -0,0 +1,15 @@
+$NetBSD$
+
+# Ensure assumed alignment
+
+--- FastTree-2.1.11.c.orig	2024-12-03 14:56:25.897785201 +0000
++++ FastTree-2.1.11.c
+@@ -8782,7 +8782,7 @@ double pnorm(double x)
+ 
+ void *mymalloc(size_t sz) {
+   if (sz == 0) return(NULL);
+-  void *new = malloc(sz);
++  void *new = aligned_alloc(16, sz);
+   if (new == NULL) {
+     fprintf(stderr, "Out of memory\n");
+     exit(1);