CVS commit: wip/R-bnlearn

["Mike M. Volokhov" <bubuchka%users.sourceforge.net@localhost>]

Module name:    wip
Committed by:   bubuchka
Date:           Tue Jul 10 13:48:50 UTC 2012

Modified Files:
        wip/R-bnlearn: Makefile distinfo

Log Message:
Update bnlearn to version 3.0. Changes:

* added dsep() to test d-separation.
* implemented Tree-Augmented Naive Bayes (TAN) in tree.bayes().
* implemented Semi-Interleaved HITON-PC in si.hiton.pc().
* improved parsing in read.{bif,dsc,net}().
* fixed an indexing error in Gaussian permutation tests.
* added a "textCol" highlight option to graphviz.plot().
* added {incoming,outgoing,incident}.arcs().
* fixed two hard-tohit bugs in TABU search (thanks Maxime Gasse).
* added custom.fit() for expert parameter specification.
* added support for Markov blanket preseeding in learn.mb().
* assume independence instead of returning an error when a
  partial correlation test fails due to errors in the
  computation of the pseudoinverse of the covariance matrix.
* fixed an incorrect optimization in the backward phase of mmpc().
* fixed a floating point rounding problem in the mutual
  information tests (64bit OSes only, thanks Maxime Gasse).
* fixed cp{query,dist}() handling of TRUE (thanks Maxime Gasse).
* added learn.nbr() to complement learn.mb().


To generate a diff of this commit:
cvs -z3 rdiff -u -r1.1.1.1 -r1.2 wip/R-bnlearn/Makefile \
    wip/R-bnlearn/distinfo

To view a diff of this commit:
http://pkgsrc-wip.cvs.sourceforge.net/pkgsrc-wip/wip/R-bnlearn/Makefile?r1=1.1.1.1&r2=1.2
http://pkgsrc-wip.cvs.sourceforge.net/pkgsrc-wip/wip/R-bnlearn/distinfo?r1=1.1.1.1&r2=1.2

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

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