CVS commit: wip/jellyfish

["Jason Bacon" <outpaddling%users.sourceforge.net@localhost>]

Module name:	wip
Committed by:	outpaddling
Date:		Wed Jan 28 16:36:28 UTC 2015

Added Files:
	wip/jellyfish: DESCR Makefile PLIST buildlink3.mk distinfo

Log Message:
Import jellyfish-1.1.11 as wip/jellyfish.

Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA.
A k-mer is a substring of length k, and counting the occurrences of all such
substrings is a central step in many analyses of DNA sequence. JELLYFISH can
count k-mers quickly by using an efficient encoding of a hash table and by
exploiting the "compare-and-swap" CPU instruction to increase parallelism.

WWW: http://www.genome.umd.edu/jellyfish.html

To generate a diff of this commit:
cvs -z3 rdiff -u -r0 -r1.1 wip/jellyfish/DESCR wip/jellyfish/Makefile \
    wip/jellyfish/PLIST wip/jellyfish/buildlink3.mk wip/jellyfish/distinfo

To view a diff of this commit:
http://pkgsrc-wip.cvs.sourceforge.net/pkgsrc-wip/wip/jellyfish/DESCR?r1=0&r2=1.1
http://pkgsrc-wip.cvs.sourceforge.net/pkgsrc-wip/wip/jellyfish/Makefile?r1=0&r2=1.1
http://pkgsrc-wip.cvs.sourceforge.net/pkgsrc-wip/wip/jellyfish/PLIST?r1=0&r2=1.1
http://pkgsrc-wip.cvs.sourceforge.net/pkgsrc-wip/wip/jellyfish/buildlink3.mk?r1=0&r2=1.1
http://pkgsrc-wip.cvs.sourceforge.net/pkgsrc-wip/wip/jellyfish/distinfo?r1=0&r2=1.1

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

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