Mayuresh <mayuresh%acm.org@localhost> writes: > On Mon, Aug 19, 2013 at 04:09:48PM -0400, Greg Troxel wrote: >> 1) make sure ncbi is packaged > > Yes, installed from wip. > >> 2) patch mpiblast not to try to build ncbi, and to use an installed >> version > > I have added buildlink to ncbi-lib. I am not sure what else is supposed to > be done. > > mpiblast allows overriding NCBDIR (which defaults to its captive copy) and > then it will look for $NCBDIR/include and $NCBDIR/lib etc. > > How exactly shall I override NCBDIR? Is buildlink supposed to help meet > above directory structure? buildlink gets things set up, but since mpiblast (apparently) has its own configure mechanism, you probably need to add CONFIGURE_ARGS+= line, or a CONFIGURE_ENV or BUILD_ENV. See devel/libslang2/Makefile for one example among many.
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