Subject: Re: Installing SGE problem
To: None <tech-cluster@NetBSD.org>
From: Ron Chen <ron_chen_123@yahoo.com>
List: tech-cluster
Date: 09/07/2004 17:10:54
Do you have Motif installed on the machine?
Also, you can skip compiling qmon with the aimk switch
"-no-qmon".
-Ron
--- Co Thai Ngo <cngo@nmsu.edu> wrote:
> Hi,
>
> I've got the following problem while trying
> installing SGE package. Any help to
> resolve it is highly appreciated.
>
> ********************
>
> ....
>
> __________Q_M_O_N____________
> gcc -c -O -Wall -DNETBSD -DNETBSD_I386 -DSECURE
> -I/home/cngo/pkg/include
> -DENABLE_438_FIX -I/usr/X11R6/include -DCOMPILE_DC
> -D__SGE_NO_USERMAPPING__
> -I../Xmt310 -Wno-strict-prototypes -Wno-error
> -DHAVE_MEMMOVE
> -DXMT_HAS_STRERROR -I../3rdparty/qmon/Xmt310
> -I../3rdparty/qmon/Xbae
> -I../3rdparty/qmon/iconlist -I../3rdparty/qmon/ltree
> -I../3rdparty/qmon/outline
> -I../3rdparty/qmon/rowcol -I../3rdparty/qmon/spinbox
> -I../clients/qmon
> -I../3rdparty/qmon/tab -I/usr/X11R6/include
> ../Xmt310/Xmt/All.c
> In file included from ../Xmt310/Xmt/All.c:23:
> ../Xmt310/Xmt/Xmt.h:56: Xm/Xm.h: No such file or
> directory
> In file included from ../Xmt310/Xmt/All.c:27:
> ../Xmt310/Xmt/Layout.h:24: Xm/BulletinB.h: No such
> file or directory
> gmake: *** [All.o] Error 1
> not done
> *** Error code 1
>
> Stop.
> make: stopped in
> /home/cngo/cvs/NetBSD/pkgsrc/parallel/sge
> *** Error code 1
>
> .....
>
> *************
>
>
> Quoting Ron Chen <ron_chen_123@yahoo.com>:
>
> > SGE support for NetBSD was checked into the
> project
> > cvs for a long time, you just need to get the SGE
> 5.3
> > branch source tree from the SGE project site cvs.
> >
> > -Ron
> >
> > --- MLH <mlh@goathill.org> wrote:
> > > > Hi,
> > > >
> > > > Do you use Sun Grid Engine ? How does it work
> ?
> > > I've checked your website but I
> > > > don't see any information about how SGE.
> > > >
> > > > > for linkage analysis. We are running an
> > > SGE-enabled version of
> > > > > SOLAR that manages all compute tasks.
> Currently
> > > the cluster is
> > > > > composed of MP Athlons and a few
> experimental
> > > Opteron boxes running
> > > > > solaris86.
> > >
> > > We use GridEngine on Solaris/Solaris86. The
> cluster
> > > is all running
> > > Solaris86 right now. I had a local student
> working
> > > to port SGE to
> > > NetBSD for me last year. Several people were
> > > apparently working on
> > > it at the same time and it came together, but
> I've
> > > been too busy
> > > to do much with a NetBSD cluster right now.
> > >
> > > SGE is essentially integrated into the front-end
> of
> > > our software.
> > > All of tour software can run without SGE. It
> just
> > > make things easier
> > > to work iwth a cluster. There is a custom
> version
> > > of SOLAR that
> > > embeds the SGE control mechanisms to launch and
> > > manage the tasks
> > > and we have many other scripts which use SGE to
> > > manage custom
> > > operations. We haven't implemented any smp-type
> > > code. It's just
> > > typical task-oriented code that we throw at a
> bunch
> > > of processors
> > > at the same time. Much of what we do can be
> broken
> > > down for analysis
> > > by marker, chromosome, trait, or individual etc.
> so
> > > it's easier to
> > > arrange to have several hundred cpus each run
> one
> > > fairly linear
> > > task at a time and report back when done. Not
> > > terribly fancy, but
> > > quite effective.
> > >
> > > If you are interested, I can likely put you
> touch
> > > with a couple of
> > > people who develop the SGE management
> facilities.
> > >
> > >
> >
> >
> >
> >
> >
> > __________________________________
> > Do you Yahoo!?
> > New and Improved Yahoo! Mail - 100MB free storage!
>
> > http://promotions.yahoo.com/new_mail
> >
>
>
> --
> Co Thai Ngo
> Dept. of Biology
> New Mexico State University
>
_______________________________
Do you Yahoo!?
Win 1 of 4,000 free domain names from Yahoo! Enter now.
http://promotions.yahoo.com/goldrush