htslib: Upgrade to 1.10.2 and clean up

[Jason Bacon <bacon%NetBSD.org@localhost>]

Module Name:	pkgsrc-wip
Committed By:	Jason Bacon <bacon%NetBSD.org@localhost>
Pushed By:	outpaddling
Date:		Thu May 21 13:35:10 2020 -0500
Changeset:	3cd03b45f22f741df36f6ca0975219c72beeba74

Modified Files:
	htslib/Makefile
	htslib/PLIST
	htslib/distinfo

Log Message:
htslib: Upgrade to 1.10.2 and clean up

To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=3cd03b45f22f741df36f6ca0975219c72beeba74

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

diffstat:
 htslib/Makefile | 19 +++++++++++--------
 htslib/PLIST    |  3 ++-
 htslib/distinfo |  8 ++++----
 3 files changed, 17 insertions(+), 13 deletions(-)

diffs:
diff --git a/htslib/Makefile b/htslib/Makefile
index 8ea3f615ba..9b13c2d6b8 100644
--- a/htslib/Makefile
+++ b/htslib/Makefile
@@ -1,6 +1,6 @@
 # $NetBSD$
 
-DISTNAME=	htslib-1.9
+DISTNAME=	htslib-1.10.2
 CATEGORIES=	biology
 MASTER_SITES=	${MASTER_SITE_GITHUB:=samtools/}
 
@@ -9,22 +9,25 @@ HOMEPAGE=	https://www.htslib.org/
 COMMENT=	C library for high-throughput sequencing data formats
 LICENSE=	mit
 
-USE_TOOLS+=	autoconf automake autoreconf gmake perl
-GNU_CONFIGURE=	yes
-REPLACE_PERL=	test/compare_sam.pl test/test.pl
+USE_TOOLS+=		autoconf automake autoreconf gmake perl
+GNU_CONFIGURE=		yes
+CONFIGURE_ARGS+=	--enable-libcurl
+PKGCONFIG_OVERRIDE=	htslib.pc.in
+TEST_TARGET=		test
+
+REPLACE_PERL+=		test/compare_sam.pl
+REPLACE_PERL+=		test/test.pl
 
 SUBST_CLASSES+=		version
 SUBST_STAGE.version=	pre-configure
 SUBST_SED.version=	-e "s|m4_esyscmd_s(\[make print-version\])|[${PKGVERSION_NOREV}]|"
 SUBST_FILES.version=	${WRKSRC}/configure.ac
 
-PKGCONFIG_OVERRIDE=	htslib.pc.in
-
 pre-configure:
-	cd ${WRKSRC} && autoreconf
+	(cd ${WRKSRC} && autoreconf)
 
-.include "../../devel/zlib/buildlink3.mk"
 .include "../../archivers/bzip2/buildlink3.mk"
 .include "../../archivers/xz/buildlink3.mk"
+.include "../../devel/zlib/buildlink3.mk"
 .include "../../www/curl/buildlink3.mk"
 .include "../../mk/bsd.pkg.mk"
diff --git a/htslib/PLIST b/htslib/PLIST
index 449307bed6..94636d827e 100644
--- a/htslib/PLIST
+++ b/htslib/PLIST
@@ -31,7 +31,7 @@ include/htslib/vcfutils.h
 lib/libhts.a
 lib/libhts.so
 lib/libhts.so.${PKGVERSION}
-lib/libhts.so.2
+lib/libhts.so.3
 lib/pkgconfig/htslib.pc
 man/man1/bgzip.1
 man/man1/htsfile.1
@@ -39,3 +39,4 @@ man/man1/tabix.1
 man/man5/faidx.5
 man/man5/sam.5
 man/man5/vcf.5
+man/man7/htslib-s3-plugin.7
diff --git a/htslib/distinfo b/htslib/distinfo
index 71e0a29262..9b637567b5 100644
--- a/htslib/distinfo
+++ b/htslib/distinfo
@@ -1,6 +1,6 @@
 $NetBSD$
 
-SHA1 (htslib-1.9.tar.gz) = 0bf3cb05883a38ea4da10711e833b007df723cc1
-RMD160 (htslib-1.9.tar.gz) = 8dbb5b435c91c461e17c71b2c14f1939884188e1
-SHA512 (htslib-1.9.tar.gz) = d44f6e47c4afb83adf78931fdd4dee38c2ffbf20c562f5c591369d875335dee669c3b9d93b7993e988f396fce34e23de0443f8cd41bdef0f21a8585ef95a9f29
-Size (htslib-1.9.tar.gz) = 1285580 bytes
+SHA1 (htslib-1.10.2.tar.gz) = 0ac4b86e49556d7dcaa89d4cce2661c9ca706631
+RMD160 (htslib-1.10.2.tar.gz) = 6d8b6a362297345420dc9acc544029276ce4b1b6
+SHA512 (htslib-1.10.2.tar.gz) = 7a91c15ca1de35653d068dc57ae511ad791ae0bd8504867d4e60c46e813e58b441409541197cde3b2a37840e60331336aebc627ecbf5c64fca1af63dd05f8f9e
+Size (htslib-1.10.2.tar.gz) = 1452177 bytes