samtools: Update to 1.17

[Jason Bacon <bacon%NetBSD.org@localhost>]

Module Name:	pkgsrc-wip
Committed By:	Jason Bacon <bacon%NetBSD.org@localhost>
Pushed By:	outpaddling
Date:		Fri Feb 24 17:44:37 2023 -0600
Changeset:	90d469d780159e86a14ea5c332219c478a581e88

Modified Files:
	samtools/Makefile
	samtools/PLIST
	samtools/distinfo

Log Message:
samtools: Update to 1.17

Numerous enhancements and fixes

To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=90d469d780159e86a14ea5c332219c478a581e88

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

diffstat:
 samtools/Makefile | 2 +-
 samtools/PLIST    | 3 +++
 samtools/distinfo | 6 +++---
 3 files changed, 7 insertions(+), 4 deletions(-)

diffs:
diff --git a/samtools/Makefile b/samtools/Makefile
index 5d6b79e4e3..745aec63b0 100644
--- a/samtools/Makefile
+++ b/samtools/Makefile
@@ -1,6 +1,6 @@
 # $NetBSD: Makefile,v 1.7 2020/01/26 17:30:46 rillig Exp $
 
-DISTNAME=	samtools-1.15
+DISTNAME=	samtools-1.17
 CATEGORIES=	biology
 MASTER_SITES=	${MASTER_SITE_GITHUB:=samtools/}
 
diff --git a/samtools/PLIST b/samtools/PLIST
index 2836535b34..ac9c283ebf 100644
--- a/samtools/PLIST
+++ b/samtools/PLIST
@@ -30,6 +30,7 @@ man/man1/samtools-cat.1
 man/man1/samtools-collate.1
 man/man1/samtools-consensus.1
 man/man1/samtools-coverage.1
+man/man1/samtools-cram-size.1
 man/man1/samtools-depad.1
 man/man1/samtools-depth.1
 man/man1/samtools-dict.1
@@ -49,7 +50,9 @@ man/man1/samtools-merge.1
 man/man1/samtools-mpileup.1
 man/man1/samtools-phase.1
 man/man1/samtools-quickcheck.1
+man/man1/samtools-reference.1
 man/man1/samtools-reheader.1
+man/man1/samtools-reset.1
 man/man1/samtools-rmdup.1
 man/man1/samtools-samples.1
 man/man1/samtools-sort.1
diff --git a/samtools/distinfo b/samtools/distinfo
index 6fde1c58cb..db27aef5f2 100644
--- a/samtools/distinfo
+++ b/samtools/distinfo
@@ -1,6 +1,6 @@
 $NetBSD$
 
-BLAKE2s (samtools-1.15.tar.gz) = b37f18ce7134f921f1e8b5ebb087ad88b387934080742f26708bbecf9ddb5df7
-SHA512 (samtools-1.15.tar.gz) = fad213b6d7eb8885b67642ad7235fb35a923238c13fac7fde501f0d8093fa90d49539e895691bc61a94f6d25e8cdfc4e2c4e94ff0ea91ceee248d5140f561cd6
-Size (samtools-1.15.tar.gz) = 4970205 bytes
+BLAKE2s (samtools-1.17.tar.gz) = 243349a1b1599faefb726b9d12d0aa8df77b84aa8457a8855296d74853ead169
+SHA512 (samtools-1.17.tar.gz) = c65862fd1e8f5fee860211c6a239cc8bcea9c9ee13b43e509dc117492015212f05d6a787b1e5e4f6d18027682789b85eb76a9b3c48e7fe0258e2f8c6a8ffaa2c
+Size (samtools-1.17.tar.gz) = 5459752 bytes
 SHA1 (patch-Makefile) = 3fc1f1d67167c8ca8eff1ed17f7a084ec3d4579d