I think it makes sense to have 'disable v6' and 'disable v4' as sysctls; that avoids the 'recompile the kernel'. As for the problems, are they the result of a host getting a non-working v6 address on a broken subnet? I have been running dual v4/v6 setups in many places for years, and had AAAA records for some of my machines, and the only problems I've had have been when a local v6 router advertises a prefix but connectivity is not there.
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